Skip to content

Latest commit

 

History

History
15 lines (11 loc) · 580 Bytes

README.md

File metadata and controls

15 lines (11 loc) · 580 Bytes

AnnotateR

Takes and annotates raw metagenome bins for input into AnnoVisR

This script requires the following programs to be in your path:

  1. Prodigal
  2. HMMER
  3. CheckM (Optional; https://github.com/Ecogenomics/CheckM/wiki/Installation)
  4. pplacer (If running CheckM; https://github.com/matsen/pplacer/releases/tag/v1.1.alpha17)

Input Requirements:

  • Input files must be in fasta format and can either be genome DNA scaffolds or protein sequences
  • DNA scaffold files must be named [my_genome_name].fasta
  • Protein files must be named [my_proteins_name].faa