v0.6.8

0.6.8 (2024-07-03)

Dependencies

• Update conda environment files to remove the 'intel' channel (4572252)

Documentation

• update documentation page accordingly (4572252)

v0.6.7

0.6.7 (2024-04-04)

Bug Fixes

• properly handle empty index files (0ee4d74)

Dependencies

• explicitly state the nodefaults channel in all environments (749ad4a)
• remove anaconda and defaults channels from conda recipes (e201894)
• solve minor installation hassles for the main environment (749ad4a)

v0.6.6

0.6.6 (2023-03-01)

Dependencies

• Update AmpliGone to v1.2.1 (67706ff)

v0.6.5

0.6.5 (2023-01-17)

Code Refactoring

• re-balance threads to improve parallelization in local execution mode (use at most n threads for certain steps) (a8bccad)

v0.6.4

0.6.4 (2022-10-10)

Dependencies

• set tabulate version to 0.8.10 in Typing environment as workaround (a391864)

v0.6.3

0.6.3 (2022-10-10)

Dependencies

• pin python-tabulate to v0.8.10 as a workaround for snakemake (3766878)

v0.6.2

0.6.2 (2022-08-23)

Bug Fixes

• change the directory with nextclade dataset from temp to non-temp in order to circumvent a WorkflowError (ae3da11)

v0.6.1

0.6.1 (2022-08-15)

Bug Fixes

• write AmpliGone output to logfile instead of stdout (ff16fe4)

Dependencies

• simplify the QC_and_cleanup environment (8a8059e)
• update Nextclade to newer (lenient) version 2.4.x (d5b90e2)
• Update required snakemake version to 7.x (pinned to 7.12.1) (b171fc4)
• upgrade AmpliGone to version 1.1.0 (ec005aa)
• use the bioconda channel to install AmpliGone instead of pip (8a8059e)

SARS2seq v0.6.0

Features

• Update TrueConsense to 0.5.0 (972c08a)

Bug Fixes

• Update Ampligone to 1.0.1 (cce0e31)

SARS2seq v0.5.4

Dependencies

• pin pangolin version number to 4.0.2 without auto-updating (27e30d3)