fix: write AmpliGone output to logfile instead of stdout

RIVM-bioinformatics · Aug 15, 2022 · ff16fe4 · ff16fe4
1 parent b171fc4
commit ff16fe4
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/SARS2seq/workflow/workflow.smk b/SARS2seq/workflow/workflow.smk
@@ -417,7 +417,7 @@ if config["primer_file"] != "NONE":
             -at {params.amplicontype} \
             --export-primers {output.ep} \
             -to \
-            -t {threads}
+            -t {threads} > {log} 2>&1
             """
 if config["primer_file"] == "NONE":
     rule RemovePrimers: