Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fixes runner tests #362

Merged
merged 4 commits into from
Sep 21, 2021
Merged

Fixes runner tests #362

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
4 commits
Select commit Hold shift + click to select a range
1be8025
fixes unet demo
wyli Sep 21, 2021
f5fd363
fixes install command
wyli Sep 21, 2021
6576575
fixes reg mednist
wyli Sep 21, 2021
e261a67
fixes install commands
wyli Sep 21, 2021
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
14 changes: 10 additions & 4 deletions 2d_registration/registration_mednist.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -34,15 +34,21 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "4OTG9ShCUQtS"
},
"metadata": {},
"outputs": [],
"source": [
"!BUILD_MONAI=1 pip install git+https://github.com/Project-MONAI/MONAI#egg=monai[all]\n",
"%env BUILD_MONAI=1"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"!python -c \"import monai\" || pip install -q git+https://github.com/Project-MONAI/MONAI#egg=monai[all]"
]
},
{
"cell_type": "markdown",
"metadata": {
Expand Down
4 changes: 2 additions & 2 deletions deployment/bentoml/mednist_classifier_bentoml.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@
"metadata": {},
"outputs": [],
"source": [
"!python -c \"import monai\" || pip install -q \"monai[pillow, tqdm]\"\n",
"!python -c \"import monai\" || pip install -q \"monai-weekly[pillow, tqdm]\"\n",
"!python -c \"import bentoml\" || pip install -q bentoml"
]
},
Expand Down Expand Up @@ -635,7 +635,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.10"
"version": "3.7.10"
}
},
"nbformat": 4,
Expand Down
10 changes: 9 additions & 1 deletion modules/TorchIO_MONAI_PyTorch_Lightning.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -51,6 +51,15 @@
"Training curves will be logged and visualized using TensorFlow's [TensorBoard](https://www.tensorflow.org/tensorboard). For quantitative results, we will use [Pandas](https://pandas.pydata.org/) and [Seaborn](https://seaborn.pydata.org/). Finally, we will perform a qualitative evaluation using TorchIO and [Matplotlib](https://matplotlib.org/stable/index.html)."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"!python -c \"import monai\" || pip install -q \"monai-weekly\""
]
},
{
"cell_type": "code",
"execution_count": null,
Expand All @@ -61,7 +70,6 @@
"source": [
"%%bash\n",
"pip install -q torchio==0.18.39\n",
"pip install -q monai==0.6.0\n",
"pip install -q pytorch-lightning==1.2.10\n",
"pip install -q pandas==1.1.5 seaborn==0.11.1"
]
Expand Down
Loading