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Propagate kernel size through attention Attention-UNet #7734

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May 7, 2024
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12 changes: 10 additions & 2 deletions monai/networks/nets/attentionunet.py
Original file line number Diff line number Diff line change
Expand Up @@ -29,7 +29,7 @@ def __init__(
spatial_dims: int,
in_channels: int,
out_channels: int,
kernel_size: int = 3,
kernel_size: Sequence[int] | int = 3,
strides: int = 1,
dropout=0.0,
):
Expand Down Expand Up @@ -219,7 +219,13 @@ def __init__(
self.kernel_size = kernel_size
self.dropout = dropout

head = ConvBlock(spatial_dims=spatial_dims, in_channels=in_channels, out_channels=channels[0], dropout=dropout)
head = ConvBlock(
spatial_dims=spatial_dims,
in_channels=in_channels,
out_channels=channels[0],
dropout=dropout,
kernel_size=self.kernel_size,
)
reduce_channels = Convolution(
spatial_dims=spatial_dims,
in_channels=channels[0],
Expand All @@ -245,6 +251,7 @@ def _create_block(channels: Sequence[int], strides: Sequence[int]) -> nn.Module:
out_channels=channels[1],
strides=strides[0],
dropout=self.dropout,
kernel_size=self.kernel_size,
),
subblock,
),
Expand All @@ -271,6 +278,7 @@ def _get_bottom_layer(self, in_channels: int, out_channels: int, strides: int) -
out_channels=out_channels,
strides=strides,
dropout=self.dropout,
kernel_size=self.kernel_size,
),
up_kernel_size=self.up_kernel_size,
strides=strides,
Expand Down
20 changes: 20 additions & 0 deletions tests/test_attentionunet.py
Original file line number Diff line number Diff line change
Expand Up @@ -14,11 +14,17 @@
import unittest

import torch
import torch.nn as nn

import monai.networks.nets.attentionunet as att
from tests.utils import skip_if_no_cuda, skip_if_quick


def get_net_parameters(net: nn.Module) -> int:
"""Returns the total number of parameters in a Module."""
return sum(param.numel() for param in net.parameters())


class TestAttentionUnet(unittest.TestCase):

def test_attention_block(self):
Expand Down Expand Up @@ -50,6 +56,20 @@ def test_attentionunet(self):
self.assertEqual(output.shape[0], input.shape[0])
self.assertEqual(output.shape[1], 2)

def test_attentionunet_kernel_size(self):
args_dict = {
"spatial_dims": 2,
"in_channels": 1,
"out_channels": 2,
"channels": (3, 4, 5),
"up_kernel_size": 5,
"strides": (1, 2),
}
model_a = att.AttentionUnet(**args_dict, kernel_size=5)
model_b = att.AttentionUnet(**args_dict, kernel_size=7)
self.assertEqual(get_net_parameters(model_a), 3534)
self.assertEqual(get_net_parameters(model_b), 5574)

@skip_if_no_cuda
def test_attentionunet_gpu(self):
for dims in [2, 3]:
Expand Down
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