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Feature/make properties typed #1266

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merged 10 commits into from
Sep 20, 2023
Merged

Feature/make properties typed #1266

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062d128
take property insertion apart and put it back together again
ljeub-pometry Sep 14, 2023
ed117ec
fix tests that were testing broken behaviour
ljeub-pometry Sep 14, 2023
de409f8
remove `"_id"` from properties and change stray ints to floats in pyt…
ljeub-pometry Sep 15, 2023
29d4c06
fix warnings
ljeub-pometry Sep 15, 2023
349da6e
String deduplication (#1269)
ljeub-pometry Sep 20, 2023
949abf9
fix rebase issues and clean up warnings
ljeub-pometry Sep 20, 2023
53a8f80
dubious warning fix
ljeub-pometry Sep 20, 2023
d3755e2
attribute does not work, warning is still there
ljeub-pometry Sep 20, 2023
abc37bd
simplify edge addition and deletion
ljeub-pometry Sep 20, 2023
0417fca
No more spin-locking for adding edges (instead get locks in consisten…
ljeub-pometry Sep 20, 2023
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2 changes: 1 addition & 1 deletion examples/custom_python_extension/src/lib.rs
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Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ fn py_custom_algorithm(graph: DynamicGraph) -> usize {
}

#[pymodule]
fn custom_python_extension(py: Python<'_>, m: &PyModule) -> PyResult<()> {
fn custom_python_extension(_py: Python<'_>, m: &PyModule) -> PyResult<()> {
m.add_function(wrap_pyfunction!(py_custom_algorithm, m)?)?;
Ok(())
}
9 changes: 3 additions & 6 deletions examples/rust/src/bin/lotr/main.rs
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Expand Up @@ -59,25 +59,22 @@ fn main() {
g.add_vertex(
lotr.time,
lotr.src_id.clone(),
[("type".to_string(), Prop::Str("Character".to_string()))],
[("type", Prop::str("Character"))],
)
.expect("Failed to add vertex");

g.add_vertex(
lotr.time,
lotr.dst_id.clone(),
[("type".to_string(), Prop::Str("Character".to_string()))],
[("type", Prop::str("Character"))],
)
.expect("Failed to add vertex");

g.add_edge(
lotr.time,
lotr.src_id.clone(),
lotr.dst_id.clone(),
[(
"type".to_string(),
Prop::Str("Character Co-occurrence".to_string()),
)],
[("type", Prop::str("Character Co-occurrence"))],
None,
)
.expect("Failed to add edge");
Expand Down
4 changes: 2 additions & 2 deletions js-raphtory/src/graph/edge.rs
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Expand Up @@ -4,7 +4,7 @@ use raphtory::db::{
api::view::*,
graph::{edge::EdgeView, graph::Graph as TGraph},
};
use std::{ops::Deref, sync::Arc};
use std::sync::Arc;
use wasm_bindgen::prelude::*;

#[wasm_bindgen]
Expand Down Expand Up @@ -39,7 +39,7 @@ impl Edge {
let t_props = self.0.properties();
let obj = js_sys::Map::new();
for (k, v) in t_props.iter() {
obj.set(&k.deref().into(), &JsProp(v).into());
obj.set(&k.to_string().into(), &JsProp(v).into());
}
obj
}
Expand Down
4 changes: 2 additions & 2 deletions js-raphtory/src/graph/misc.rs
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Expand Up @@ -21,7 +21,7 @@ impl From<JsProp> for JsValue {
match value.0 {
raphtory::core::Prop::U8(v) => v.into(),
raphtory::core::Prop::U16(v) => v.into(),
raphtory::core::Prop::Str(v) => v.into(),
raphtory::core::Prop::Str(v) => v.to_string().into(),
raphtory::core::Prop::I32(v) => v.into(),
raphtory::core::Prop::I64(v) => v.into(),
raphtory::core::Prop::U32(v) => v.into(),
Expand Down Expand Up @@ -68,6 +68,6 @@ impl From<JsObjectEntry> for Option<(String, Prop)> {

let key = arr.at(0).as_string().unwrap();
let value = arr.at(1).as_string().unwrap();
Some((key, Prop::Str(value)))
Some((key, Prop::str(value)))
}
}
2 changes: 1 addition & 1 deletion js-raphtory/src/graph/mod.rs
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Expand Up @@ -99,7 +99,7 @@ impl Graph {
#[wasm_bindgen(js_name = addVertex)]
pub fn add_vertex_js(&self, t: i64, id: JsValue, js_props: Object) -> Result<Vertex, JSError> {
let rust_props = if js_props.is_string() {
vec![("name".to_string(), Prop::Str(js_props.as_string().unwrap()))]
vec![("name".to_string(), Prop::str(js_props.as_string().unwrap()))]
} else if js_props.is_object() {
Object::entries(&js_props)
.iter()
Expand Down
2 changes: 1 addition & 1 deletion js-raphtory/src/graph/vertex.rs
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Expand Up @@ -100,7 +100,7 @@ impl Vertex {
pub fn properties(&self) -> js_sys::Map {
let obj = js_sys::Map::new();
for (k, v) in self.0.properties() {
obj.set(&k.into(), &JsProp(v).into());
obj.set(&k.to_string().into(), &JsProp(v).into());
}
obj
}
Expand Down
2 changes: 1 addition & 1 deletion python/src/graphql.rs
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@@ -1,6 +1,6 @@
use pyo3::{exceptions, prelude::*};
use raphtory_core::{
db::api::view::internal::{DynamicGraph, MaterializedGraph},
db::api::view::internal::MaterializedGraph,
prelude::Graph,
python::{graph::graph::PyGraph, utils::errors::adapt_err_value},
};
Expand Down
2 changes: 1 addition & 1 deletion python/src/lib.rs
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Expand Up @@ -12,7 +12,7 @@ use raphtory_core::python::{
properties::{PyConstProperties, PyProperties, PyTemporalProp, PyTemporalProperties},
vertex::{PyVertex, PyVertices},
},
packages::{algorithms::*, graph_gen::*, graph_loader::*, vectors::PyVectorizedGraph},
packages::{algorithms::*, graph_gen::*, graph_loader::*},
};

/// Raphtory graph analytics library
Expand Down
2 changes: 1 addition & 1 deletion python/tests/expected/dataframe_output/vertex_df_all.json
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@@ -1 +1 @@
{"id":{"0":"ServerA","1":"ServerB","2":"ServerC","3":"ServerD","4":"ServerE"},"properties":{"0":{"server_name":"Alpha","hardware_type":"Blade Server","datasource":"data\/network_traffic_edges.csv","_id":"ServerA","primary_function":[[1693555200000,"Database"],[1693555260000,"Database"],[1693555320000,"Database"]],"uptime_days":[[1693555200000,120],[1693555260000,121],[1693555320000,122]],"OS_version":[[1693555200000,"Ubuntu 20.04"],[1693555260000,"Ubuntu 20.04"],[1693555320000,"Ubuntu 20.04"]]},"1":{"_id":"ServerB","datasource":"data\/network_traffic_edges.csv","hardware_type":"Rack Server","server_name":"Beta","uptime_days":[[1693555500000,45]],"OS_version":[[1693555500000,"Red Hat 8.1"]],"primary_function":[[1693555500000,"Web Server"]]},"2":{"_id":"ServerC","server_name":"Charlie","datasource":"data\/network_traffic_edges.csv","hardware_type":"Blade Server","OS_version":[[1693555800000,"Windows Server 2022"]],"primary_function":[[1693555800000,"File Storage"]],"uptime_days":[[1693555800000,90]]},"3":{"_id":"ServerD","datasource":"data\/network_traffic_edges.csv","server_name":"Delta","hardware_type":"Tower Server","uptime_days":[[1693556100000,60]],"OS_version":[[1693556100000,"Ubuntu 20.04"]],"primary_function":[[1693556100000,"Application Server"]]},"4":{"server_name":"Echo","hardware_type":"Rack Server","datasource":"data\/network_traffic_edges.csv","_id":"ServerE","primary_function":[[1693556400000,"Backup"]],"OS_version":[[1693556400000,"Red Hat 8.1"]],"uptime_days":[[1693556400000,30]]}},"update_history":{"0":[1693555200000,1693555260000,1693555320000,1693555500000,1693556400000],"1":[1693555200000,1693555500000,1693555800000,1693556700000],"2":[1693555500000,1693555800000,1693556400000,1693557000000,1693557060000,1693557120000],"3":[1693555800000,1693556100000,1693557000000,1693557060000,1693557120000],"4":[1693556100000,1693556400000,1693556700000]}}
{"id":{"0":"ServerA","1":"ServerB","2":"ServerC","3":"ServerD","4":"ServerE"},"properties":{"0":{"server_name":"Alpha","hardware_type":"Blade Server","datasource":"data\/network_traffic_edges.csv","primary_function":[[1693555200000,"Database"],[1693555260000,"Database"],[1693555320000,"Database"]],"uptime_days":[[1693555200000,120],[1693555260000,121],[1693555320000,122]],"OS_version":[[1693555200000,"Ubuntu 20.04"],[1693555260000,"Ubuntu 20.04"],[1693555320000,"Ubuntu 20.04"]]},"1":{"datasource":"data\/network_traffic_edges.csv","hardware_type":"Rack Server","server_name":"Beta","uptime_days":[[1693555500000,45]],"OS_version":[[1693555500000,"Red Hat 8.1"]],"primary_function":[[1693555500000,"Web Server"]]},"2":{"server_name":"Charlie","datasource":"data\/network_traffic_edges.csv","hardware_type":"Blade Server","OS_version":[[1693555800000,"Windows Server 2022"]],"primary_function":[[1693555800000,"File Storage"]],"uptime_days":[[1693555800000,90]]},"3":{"datasource":"data\/network_traffic_edges.csv","server_name":"Delta","hardware_type":"Tower Server","uptime_days":[[1693556100000,60]],"OS_version":[[1693556100000,"Ubuntu 20.04"]],"primary_function":[[1693556100000,"Application Server"]]},"4":{"server_name":"Echo","hardware_type":"Rack Server","datasource":"data\/network_traffic_edges.csv","primary_function":[[1693556400000,"Backup"]],"OS_version":[[1693556400000,"Red Hat 8.1"]],"uptime_days":[[1693556400000,30]]}},"update_history":{"0":[1693555200000,1693555260000,1693555320000,1693555500000,1693556400000],"1":[1693555200000,1693555500000,1693555800000,1693556700000],"2":[1693555500000,1693555800000,1693556400000,1693557000000,1693557060000,1693557120000],"3":[1693555800000,1693556100000,1693557000000,1693557060000,1693557120000],"4":[1693556100000,1693556400000,1693556700000]}}
2 changes: 1 addition & 1 deletion python/tests/expected/dataframe_output/vertex_df_no_hist.json
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@@ -1 +1 @@
{"id":{"0":"ServerA","1":"ServerB","2":"ServerC","3":"ServerD","4":"ServerE"},"properties":{"0":{"datasource":"data\/network_traffic_edges.csv","server_name":"Alpha","hardware_type":"Blade Server","_id":"ServerA","OS_version":[[1693555200000,"Ubuntu 20.04"],[1693555260000,"Ubuntu 20.04"],[1693555320000,"Ubuntu 20.04"]],"uptime_days":[[1693555200000,120],[1693555260000,121],[1693555320000,122]],"primary_function":[[1693555200000,"Database"],[1693555260000,"Database"],[1693555320000,"Database"]]},"1":{"datasource":"data\/network_traffic_edges.csv","_id":"ServerB","hardware_type":"Rack Server","server_name":"Beta","primary_function":[[1693555500000,"Web Server"]],"uptime_days":[[1693555500000,45]],"OS_version":[[1693555500000,"Red Hat 8.1"]]},"2":{"hardware_type":"Blade Server","_id":"ServerC","server_name":"Charlie","datasource":"data\/network_traffic_edges.csv","uptime_days":[[1693555800000,90]],"OS_version":[[1693555800000,"Windows Server 2022"]],"primary_function":[[1693555800000,"File Storage"]]},"3":{"server_name":"Delta","hardware_type":"Tower Server","datasource":"data\/network_traffic_edges.csv","_id":"ServerD","uptime_days":[[1693556100000,60]],"OS_version":[[1693556100000,"Ubuntu 20.04"]],"primary_function":[[1693556100000,"Application Server"]]},"4":{"datasource":"data\/network_traffic_edges.csv","hardware_type":"Rack Server","server_name":"Echo","_id":"ServerE","uptime_days":[[1693556400000,30]],"OS_version":[[1693556400000,"Red Hat 8.1"]],"primary_function":[[1693556400000,"Backup"]]}}}
{"id":{"0":"ServerA","1":"ServerB","2":"ServerC","3":"ServerD","4":"ServerE"},"properties":{"0":{"datasource":"data\/network_traffic_edges.csv","server_name":"Alpha","hardware_type":"Blade Server","OS_version":[[1693555200000,"Ubuntu 20.04"],[1693555260000,"Ubuntu 20.04"],[1693555320000,"Ubuntu 20.04"]],"uptime_days":[[1693555200000,120],[1693555260000,121],[1693555320000,122]],"primary_function":[[1693555200000,"Database"],[1693555260000,"Database"],[1693555320000,"Database"]]},"1":{"datasource":"data\/network_traffic_edges.csv","hardware_type":"Rack Server","server_name":"Beta","primary_function":[[1693555500000,"Web Server"]],"uptime_days":[[1693555500000,45]],"OS_version":[[1693555500000,"Red Hat 8.1"]]},"2":{"hardware_type":"Blade Server","server_name":"Charlie","datasource":"data\/network_traffic_edges.csv","uptime_days":[[1693555800000,90]],"OS_version":[[1693555800000,"Windows Server 2022"]],"primary_function":[[1693555800000,"File Storage"]]},"3":{"server_name":"Delta","hardware_type":"Tower Server","datasource":"data\/network_traffic_edges.csv","uptime_days":[[1693556100000,60]],"OS_version":[[1693556100000,"Ubuntu 20.04"]],"primary_function":[[1693556100000,"Application Server"]]},"4":{"datasource":"data\/network_traffic_edges.csv","hardware_type":"Rack Server","server_name":"Echo","uptime_days":[[1693556400000,30]],"OS_version":[[1693556400000,"Red Hat 8.1"]],"primary_function":[[1693556400000,"Backup"]]}}}
2 changes: 1 addition & 1 deletion python/tests/expected/dataframe_output/vertex_df_no_prop_hist.json
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@@ -1 +1 @@
{"id":{"0":"ServerA","1":"ServerB","2":"ServerC","3":"ServerD","4":"ServerE"},"properties":{"0":{"_id":"ServerA","server_name":"Alpha","datasource":"data\/network_traffic_edges.csv","hardware_type":"Blade Server","uptime_days":122,"OS_version":"Ubuntu 20.04","primary_function":"Database"},"1":{"primary_function":"Web Server","_id":"ServerB","server_name":"Beta","OS_version":"Red Hat 8.1","hardware_type":"Rack Server","datasource":"data\/network_traffic_edges.csv","uptime_days":45},"2":{"primary_function":"File Storage","server_name":"Charlie","datasource":"data\/network_traffic_edges.csv","hardware_type":"Blade Server","OS_version":"Windows Server 2022","_id":"ServerC","uptime_days":90},"3":{"primary_function":"Application Server","OS_version":"Ubuntu 20.04","_id":"ServerD","server_name":"Delta","datasource":"data\/network_traffic_edges.csv","uptime_days":60,"hardware_type":"Tower Server"},"4":{"primary_function":"Backup","hardware_type":"Rack Server","_id":"ServerE","OS_version":"Red Hat 8.1","datasource":"data\/network_traffic_edges.csv","uptime_days":30,"server_name":"Echo"}},"update_history":{"0":[1693555200000,1693555260000,1693555320000,1693555500000,1693556400000],"1":[1693555200000,1693555500000,1693555800000,1693556700000],"2":[1693555500000,1693555800000,1693556400000,1693557000000,1693557060000,1693557120000],"3":[1693555800000,1693556100000,1693557000000,1693557060000,1693557120000],"4":[1693556100000,1693556400000,1693556700000]}}
{"id":{"0":"ServerA","1":"ServerB","2":"ServerC","3":"ServerD","4":"ServerE"},"properties":{"0":{"server_name":"Alpha","datasource":"data\/network_traffic_edges.csv","hardware_type":"Blade Server","uptime_days":122,"OS_version":"Ubuntu 20.04","primary_function":"Database"},"1":{"primary_function":"Web Server","server_name":"Beta","OS_version":"Red Hat 8.1","hardware_type":"Rack Server","datasource":"data\/network_traffic_edges.csv","uptime_days":45},"2":{"primary_function":"File Storage","server_name":"Charlie","datasource":"data\/network_traffic_edges.csv","hardware_type":"Blade Server","OS_version":"Windows Server 2022","uptime_days":90},"3":{"primary_function":"Application Server","OS_version":"Ubuntu 20.04","server_name":"Delta","datasource":"data\/network_traffic_edges.csv","uptime_days":60,"hardware_type":"Tower Server"},"4":{"primary_function":"Backup","hardware_type":"Rack Server","OS_version":"Red Hat 8.1","datasource":"data\/network_traffic_edges.csv","uptime_days":30,"server_name":"Echo"}},"update_history":{"0":[1693555200000,1693555260000,1693555320000,1693555500000,1693556400000],"1":[1693555200000,1693555500000,1693555800000,1693556700000],"2":[1693555500000,1693555800000,1693556400000,1693557000000,1693557060000,1693557120000],"3":[1693555800000,1693556100000,1693557000000,1693557060000,1693557120000],"4":[1693556100000,1693556400000,1693556700000]}}
10 changes: 0 additions & 10 deletions python/tests/test_graph_conversions.py
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Expand Up @@ -161,7 +161,6 @@ def test_networkx_full_history():
(1693555260000, "Ubuntu 20.04"),
(1693555320000, "Ubuntu 20.04"),
],
"_id": "ServerA",
"datasource": "data/network_traffic_edges.csv",
"hardware_type": "Blade Server",
"primary_function": [
Expand All @@ -188,7 +187,6 @@ def test_networkx_full_history():
"ServerB",
{
"OS_version": [(1693555500000, "Red Hat 8.1")],
"_id": "ServerB",
"datasource": "data/network_traffic_edges.csv",
"hardware_type": "Rack Server",
"primary_function": [(1693555500000, "Web Server")],
Expand All @@ -206,7 +204,6 @@ def test_networkx_full_history():
"ServerC",
{
"OS_version": [(1693555800000, "Windows Server 2022")],
"_id": "ServerC",
"datasource": "data/network_traffic_edges.csv",
"hardware_type": "Blade Server",
"primary_function": [(1693555800000, "File Storage")],
Expand All @@ -226,7 +223,6 @@ def test_networkx_full_history():
"ServerD",
{
"OS_version": [(1693556100000, "Ubuntu 20.04")],
"_id": "ServerD",
"datasource": "data/network_traffic_edges.csv",
"hardware_type": "Tower Server",
"primary_function": [(1693556100000, "Application Server")],
Expand All @@ -245,7 +241,6 @@ def test_networkx_full_history():
"ServerE",
{
"OS_version": [(1693556400000, "Red Hat 8.1")],
"_id": "ServerE",
"datasource": "data/network_traffic_edges.csv",
"hardware_type": "Rack Server",
"primary_function": [(1693556400000, "Backup")],
Expand Down Expand Up @@ -656,7 +651,6 @@ def test_networkx_no_history():
"ServerA",
{
"OS_version": "Ubuntu 20.04",
"_id": "ServerA",
"datasource": "data/network_traffic_edges.csv",
"hardware_type": "Blade Server",
"primary_function": "Database",
Expand All @@ -668,7 +662,6 @@ def test_networkx_no_history():
"ServerB",
{
"OS_version": "Red Hat 8.1",
"_id": "ServerB",
"datasource": "data/network_traffic_edges.csv",
"hardware_type": "Rack Server",
"primary_function": "Web Server",
Expand All @@ -680,7 +673,6 @@ def test_networkx_no_history():
"ServerC",
{
"OS_version": "Windows Server 2022",
"_id": "ServerC",
"datasource": "data/network_traffic_edges.csv",
"hardware_type": "Blade Server",
"primary_function": "File Storage",
Expand All @@ -692,7 +684,6 @@ def test_networkx_no_history():
"ServerD",
{
"OS_version": "Ubuntu 20.04",
"_id": "ServerD",
"datasource": "data/network_traffic_edges.csv",
"hardware_type": "Tower Server",
"primary_function": "Application Server",
Expand All @@ -704,7 +695,6 @@ def test_networkx_no_history():
"ServerE",
{
"OS_version": "Red Hat 8.1",
"_id": "ServerE",
"datasource": "data/network_traffic_edges.csv",
"hardware_type": "Rack Server",
"primary_function": "Backup",
Expand Down
8 changes: 4 additions & 4 deletions python/tests/test_graphdb.py
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Expand Up @@ -19,7 +19,7 @@ def create_graph():

g.add_vertex(0, 1, {"type": "wallet", "cost": 99.5})
g.add_vertex(-1, 2, {"type": "wallet", "cost": 10.0})
g.add_vertex(6, 3, {"type": "wallet", "cost": 76})
g.add_vertex(6, 3, {"type": "wallet", "cost": 76.0})

for e in edges:
g.add_edge(e[0], e[1], e[2], {"prop1": 1, "prop2": 9.8, "prop3": "test"})
Expand All @@ -32,7 +32,7 @@ def create_graph_with_deletions():

g.add_vertex(0, 1, {"type": "wallet", "cost": 99.5})
g.add_vertex(-1, 2, {"type": "wallet", "cost": 10.0})
g.add_vertex(6, 3, {"type": "wallet", "cost": 76})
g.add_vertex(6, 3, {"type": "wallet", "cost": 76.0})

for e in edges:
g.add_edge(e[0], e[1], e[2], {"prop1": 1, "prop2": 9.8, "prop3": "test"})
Expand Down Expand Up @@ -832,7 +832,7 @@ def test_save_load_graph():
g = create_graph()
g.add_vertex(1, 11, {"type": "wallet", "balance": 99.5})
g.add_vertex(2, 12, {"type": "wallet", "balance": 10.0})
g.add_vertex(3, 13, {"type": "wallet", "balance": 76})
g.add_vertex(3, 13, {"type": "wallet", "balance": 76.0})
g.add_edge(4, 11, 12, {"prop1": 1, "prop2": 9.8, "prop3": "test"})
g.add_edge(5, 12, 13, {"prop1": 1321, "prop2": 9.8, "prop3": "test"})
g.add_edge(6, 13, 11, {"prop1": 645, "prop2": 9.8, "prop3": "test"})
Expand Down Expand Up @@ -1570,7 +1570,7 @@ def test_materialize_graph():

g.add_vertex(0, 1, {"type": "wallet", "cost": 99.5})
g.add_vertex(-1, 2, {"type": "wallet", "cost": 10.0})
g.add_vertex(6, 3, {"type": "wallet", "cost": 76})
g.add_vertex(6, 3, {"type": "wallet", "cost": 76.0})
g.add_vertex(6, 4).add_constant_properties({"abc": "xyz"})

for e in edges:
Expand Down
2 changes: 1 addition & 1 deletion raphtory-graphql/src/data.rs
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Expand Up @@ -88,7 +88,7 @@ impl Data {
println!("loading graph from {path}");
let graph = Graph::load_from_file(&path).expect("Unable to load from graph");
graph
.add_constant_properties([("path".to_string(), Prop::Str(path.clone()))])
.add_constant_properties([("path".to_string(), Prop::str(path.clone()))])
.expect("Failed to add static property");
let maybe_graph_name = graph.properties().get("name");

Expand Down
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