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Make mapping of cell type assignment to cell type factor more flexible #1306

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arteymix opened this issue Dec 18, 2024 · 1 comment
Open
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Make mapping of cell type assignment to cell type factor more flexible #1306

arteymix opened this issue Dec 18, 2024 · 1 comment
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cli Issues affecting the CLI enhancement Enhance the code or user experience low priority single cell Issues related to single-cell data support

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arteymix commented Dec 18, 2024 •
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At this moment, these two must match exactly when aggregating with corresponding characteristics.

  • handle the case where a cell type is not represented in the factor values
  • support custom mapping, possibly using a file format or some CLI arguments
@arteymix arteymix added enhancement Enhance the code or user experience low priority cli Issues affecting the CLI single cell Issues related to single-cell data support labels Dec 18, 2024
arteymix added a commit that referenced this issue Dec 19, 2024
@arteymix
Allow aggregating single-cell data when a factor value is missing
bea9e07 
For CLI tools, always allow this.

This is part of #1306.

Refactor SingleCellExpressionExperimentAggregatorServiceImpl into more
private methods.
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Now that we can deal with missing or deleted factors, I'll put this on hold.

@arteymix arteymix self-assigned this Dec 19, 2024
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cli Issues affecting the CLI enhancement Enhance the code or user experience low priority single cell Issues related to single-cell data support
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