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@PavlidisLab

Pavlidis lab

The Pavlidis Lab at the University of British Columbia

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  1. neuroexpresso neuroexpresso Public

    📊 Gene expression in neuroexpresso database

    R 18 1

  2. Gemma Gemma Public

    Genomics data re-analysis

    Java 23 6

  3. markerGeneProfile markerGeneProfile Public

    Marker gene profile estimation method used in NeuroExpresso manuscript

    R 14 2

Repositories

Showing 10 of 62 repositories
  • GemBrow Public

    The Gemma Browser

    PavlidisLab/GemBrow’s past year of commit activity
    Vue 4 Apache-2.0 1 24 1 Updated Oct 5, 2024
  • Gemma Public

    Genomics data re-analysis

    PavlidisLab/Gemma’s past year of commit activity
    Java 23 Apache-2.0 6 303 31 Updated Oct 5, 2024
  • TR_singlecell Public
    PavlidisLab/TR_singlecell’s past year of commit activity
    R 0 MIT 0 0 0 Updated Oct 4, 2024
  • baseCode Public

    Data structures, math and statistics tools, and utilities that are often needed across projects.

    PavlidisLab/baseCode’s past year of commit activity
    Java 5 Apache-2.0 0 3 2 Updated Oct 3, 2024
  • gotrack Public

    Web-based system and database that provides access to historical records and trends in the Gene Ontology and GO annotations

    PavlidisLab/gotrack’s past year of commit activity
    Java 1 0 16 6 Updated Sep 25, 2024
  • gemma.R Public

    An R wrapper for the Gemma RESTful API

    PavlidisLab/gemma.R’s past year of commit activity
    R 10 Apache-2.0 1 8 0 Updated Sep 24, 2024
  • coex-simulation Public

    A theoretical study on the detection of dynamic gene regulation in bulk tissue transcriptomes.

    PavlidisLab/coex-simulation’s past year of commit activity
    PostScript 0 Apache-2.0 0 0 0 Updated Sep 23, 2024
  • ermineR Public

    R wrapper for ermineJ

    PavlidisLab/ermineR’s past year of commit activity
    R 6 4 4 0 Updated Sep 19, 2024
  • ermineJ Public

    Analysis of enrichment of gene sets with a GUI and CLI

    PavlidisLab/ermineJ’s past year of commit activity
    Java 0 Apache-2.0 0 2 0 Updated Sep 18, 2024
  • ndb Public

    Web application and database providing a harmonized and comprehensive collection of genetic variants published in peer-reviewed literature.

    PavlidisLab/ndb’s past year of commit activity
    Java 4 Apache-2.0 0 19 (1 issue needs help) 1 Updated Sep 18, 2024
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