fixes #279

OHDSI · Feb 19, 2021 · 48d82f7 · 48d82f7
1 parent e662723
commit 48d82f7
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diff --git a/...hat/src/main/resources/org/ohdsi/rabbitInAHat/dataModel/StemTableDefaultMappingV5.3.1.csv b/...hat/src/main/resources/org/ohdsi/rabbitInAHat/dataModel/StemTableDefaultMappingV5.3.1.csv
@@ -1,6 +1,7 @@
 SOURCE_TABLE,SOURCE_FIELD,TARGET_TABLE,TARGET_FIELD
 STEM_TABLE,PERSON_ID,CONDITION_OCCURRENCE,PERSON_ID
 STEM_TABLE,VISIT_OCCURRENCE_ID,CONDITION_OCCURRENCE,VISIT_OCCURRENCE_ID
+STEM_TABLE,VISIT_DETAIL_ID,CONDITION_OCCURRENCE,VISIT_DETAIL_ID
 STEM_TABLE,PROVIDER_ID,CONDITION_OCCURRENCE,PROVIDER_ID
 STEM_TABLE,ID,CONDITION_OCCURRENCE,CONDITION_OCCURRENCE_ID
 STEM_TABLE,CONCEPT_ID,CONDITION_OCCURRENCE,CONDITION_CONCEPT_ID
@@ -31,6 +32,7 @@ STEM_TABLE,ROUTE_CONCEPT_ID,DRUG_EXPOSURE,ROUTE_CONCEPT_ID
 STEM_TABLE,LOT_NUMBER,DRUG_EXPOSURE,LOT_NUMBER
 STEM_TABLE,PROVIDER_ID,DRUG_EXPOSURE,PROVIDER_ID
 STEM_TABLE,VISIT_OCCURRENCE_ID,DRUG_EXPOSURE,VISIT_OCCURRENCE_ID
+STEM_TABLE,VISIT_DETAIL_ID,DRUG_EXPOSURE,VISIT_DETAIL_ID
 STEM_TABLE,SOURCE_VALUE,DRUG_EXPOSURE,DRUG_SOURCE_VALUE
 STEM_TABLE,SOURCE_CONCEPT_ID,DRUG_EXPOSURE,DRUG_SOURCE_CONCEPT_ID
 STEM_TABLE,ROUTE_SOURCE_VALUE,DRUG_EXPOSURE,ROUTE_SOURCE_VALUE
@@ -47,6 +49,7 @@ STEM_TABLE,UNIQUE_DEVICE_ID,DEVICE_EXPOSURE,UNIQUE_DEVICE_ID
 STEM_TABLE,QUANTITY,DEVICE_EXPOSURE,QUANTITY
 STEM_TABLE,PROVIDER_ID,DEVICE_EXPOSURE,PROVIDER_ID
 STEM_TABLE,VISIT_OCCURRENCE_ID,DEVICE_EXPOSURE,VISIT_OCCURRENCE_ID
+STEM_TABLE,VISIT_DETAIL_ID,DEVICE_EXPOSURE,VISIT_DETAIL_ID
 STEM_TABLE,SOURCE_VALUE,DEVICE_EXPOSURE,DEVICE_SOURCE_VALUE
 STEM_TABLE,SOURCE_CONCEPT_ID,DEVICE_EXPOSURE,DEVICE_SOURCE_CONCEPT_ID
 STEM_TABLE,PERSON_ID,MEASUREMENT,PERSON_ID
@@ -63,6 +66,7 @@ STEM_TABLE,RANGE_LOW,MEASUREMENT,RANGE_LOW
 STEM_TABLE,RANGE_HIGH,MEASUREMENT,RANGE_HIGH
 STEM_TABLE,PROVIDER_ID,MEASUREMENT,PROVIDER_ID
 STEM_TABLE,VISIT_OCCURRENCE_ID,MEASUREMENT,VISIT_OCCURRENCE_ID
+STEM_TABLE,VISIT_DETAIL_ID,MEASUREMENT,VISIT_DETAIL_ID
 STEM_TABLE,SOURCE_VALUE,MEASUREMENT,MEASUREMENT_SOURCE_VALUE
 STEM_TABLE,SOURCE_CONCEPT_ID,MEASUREMENT,MEASUREMENT_SOURCE_CONCEPT_ID
 STEM_TABLE,UNIT_SOURCE_VALUE,MEASUREMENT,UNIT_SOURCE_VALUE
@@ -80,6 +84,7 @@ STEM_TABLE,QUALIFIER_CONCEPT_ID,OBSERVATION,QUALIFIER_CONCEPT_ID
 STEM_TABLE,UNIT_CONCEPT_ID,OBSERVATION,UNIT_CONCEPT_ID
 STEM_TABLE,PROVIDER_ID,OBSERVATION,PROVIDER_ID
 STEM_TABLE,VISIT_OCCURRENCE_ID,OBSERVATION,VISIT_OCCURRENCE_ID
+STEM_TABLE,VISIT_DETAIL_ID,OBSERVATION,VISIT_DETAIL_ID
 STEM_TABLE,SOURCE_VALUE,OBSERVATION,OBSERVATION_SOURCE_VALUE
 STEM_TABLE,SOURCE_CONCEPT_ID,OBSERVATION,OBSERVATION_SOURCE_CONCEPT_ID
 STEM_TABLE,UNIT_SOURCE_VALUE,OBSERVATION,UNIT_SOURCE_VALUE
@@ -94,6 +99,7 @@ STEM_TABLE,MODIFIER_CONCEPT_ID,PROCEDURE_OCCURRENCE,MODIFIER_CONCEPT_ID
 STEM_TABLE,QUANTITY,PROCEDURE_OCCURRENCE,QUANTITY
 STEM_TABLE,PROVIDER_ID,PROCEDURE_OCCURRENCE,PROVIDER_ID
 STEM_TABLE,VISIT_OCCURRENCE_ID,PROCEDURE_OCCURRENCE,VISIT_OCCURRENCE_ID
+STEM_TABLE,VISIT_DETAIL_ID,PROCEDURE_OCCURRENCE,VISIT_DETAIL_ID
 STEM_TABLE,SOURCE_VALUE,PROCEDURE_OCCURRENCE,PROCEDURE_SOURCE_VALUE
 STEM_TABLE,SOURCE_CONCEPT_ID,PROCEDURE_OCCURRENCE,PROCEDURE_SOURCE_CONCEPT_ID
 STEM_TABLE,MODIFIER_SOURCE_VALUE,PROCEDURE_OCCURRENCE,MODIFIER_SOURCE_VALUE

diff --git a/rabbitinahat/src/main/resources/org/ohdsi/rabbitInAHat/dataModel/StemTableV5.3.1.csv b/rabbitinahat/src/main/resources/org/ohdsi/rabbitInAHat/dataModel/StemTableV5.3.1.csv
@@ -2,6 +2,7 @@ TABLE_NAME,COLUMN_NAME,IS_NULLABLE,DATA_TYPE,DESCRIPTION
 STEM_TABLE,DOMAIN_ID,NO,CHARACTER VARYING,"A foreign key idenfifying the domain this event belongs to. The domain drives the target CDM table this event will be recorded in.  If one is not set specify a default domain."
 STEM_TABLE,PERSON_ID,NO,INTEGER,"A foreign key identifier to the Person. The demographic details of that Person are stored in the PERSON table."
 STEM_TABLE,VISIT_OCCURRENCE_ID,YES,INTEGER,"A foreign key to the visit in the VISIT table."
+STEM_TABLE,VISIT_DETAIL_ID,YES,INTEGER,"A foreign key to the visit detail in the VISIT_DETAIL table."
 STEM_TABLE,PROVIDER_ID,YES,INTEGER,"A foreign key to the Provider in the PROVIDER table who was responsible for capturing this event."
 STEM_TABLE,ID,NO,INTEGER,"A unique identifier for identifying the event."
 STEM_TABLE,CONCEPT_ID,NO,INTEGER,"A foreign key that refers to a Standard Condition Concept identifier in the Standardized Vocabularies."
@@ -19,7 +20,6 @@ STEM_TABLE,LOT_NUMBER,YES,CHARACTER VARYING,"An identifier assigned to a particu
 STEM_TABLE,MODIFIER_CONCEPT_ID,YES,INTEGER,A foreign key to a Standard Concept identifier for a modifier (e.g. bilateral)
 STEM_TABLE,MODIFIER_SOURCE_VALUE,YES,CHARACTER VARYING,The source code for the modifier as it appears in the source data.
 STEM_TABLE,OPERATOR_CONCEPT_ID,YES,INTEGER,"A foreign key identifier to the predefined Concept in the Standardized Vocabularies reflecting the mathematical operator that is applied to the value_as_number. Operators are <, ?, =, ?, >."
-STEM_TABLE,MODIFIER_SOURCE_VALUE,YES,CHARACTER VARYING,"The source code for the modifier as it appears in the source data."
 STEM_TABLE,QUANTITY,YES,INTEGER,"The number of individual Devices/Procedures/Drugs used for the exposure."
 STEM_TABLE,RANGE_HIGH,YES,FLOAT,"The upper limit of the normal range of the Measurement. The upper range is assumed to be of the same unit of measure as the Measurement value."
 STEM_TABLE,RANGE_LOW,YES,FLOAT,"The lower limit of the normal range of the Measurement result. The lower range is assumed to be of the same unit of measure as the Measurement value."