merge master #180

Nic-Ma · 2021-07-22T02:27:20Z

Fixes # .

Description

A few sentences describing the changes proposed in this pull request.

Status

Ready/Work in progress/Hold

Types of changes

Non-breaking change (fix or new feature that would not break existing functionality).
Breaking change (fix or new feature that would cause existing functionality to change).
New tests added to cover the changes.
Integration tests passed locally by running ./runtests.sh --codeformat --coverage.
Quick tests passed locally by running ./runtests.sh --quick.
In-line docstrings updated.
Documentation updated, tested make html command in the docs/ folder.

* [DLMED] add logging Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix classification issue Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add detach for Tensor Signed-off-by: Nic Ma <nma@nvidia.com> * fixes test Signed-off-by: Wenqi Li <wenqil@nvidia.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com>

* adding error messaging for unsupported tensor shapes Signed-off-by: chaliebudd <charles.budd@kcl.ac.uk> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com>

* [DLMED] Enhance unit test and doc-string Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] enhance unit test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix CI test issue Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>

* [DLMED] fix shallow copy issue Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add patch_index to RandWeightedCrop Signed-off-by: Nic Ma <nma@nvidia.com>

Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* update readme Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update index Signed-off-by: Wenqi Li <wenqil@nvidia.com> * relative links Signed-off-by: Wenqi Li <wenqil@nvidia.com> Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>

* Added RicianNoise transform Signed-off-by: Lyndon Boone <lyndonboone8@gmail.com> * Use ensure_tuple_rep in channel-wise RandRicianNoise transform Signed-off-by: Lyndon Boone <lyndonboone8@gmail.com> * Added RandRicianNoised transform Signed-off-by: Lyndon Boone <lyndonboone8@gmail.com> * Autofixed coding style errors Signed-off-by: Lyndon Boone <lyndonboone8@gmail.com> * Added paper reference for RandRicianNoise in docstring Signed-off-by: Lyndon Boone <lyndonboone8@gmail.com> * Added unit test for RandRicianNoise transform Signed-off-by: Lyndon Boone <lyndonboone8@gmail.com> * Added unit test for RandRicianNoised transform Signed-off-by: Lyndon Boone <lyndonboone8@gmail.com> * Fixed mypy typing issues Signed-off-by: Lyndon Boone <lyndonboone8@gmail.com>

Signed-off-by: Nic Ma <nma@nvidia.com>

Signed-off-by: Jeff VanOss <vanossj@gmail.com>

* update compose Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* adds tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * temp tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * temp tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * torch Signed-off-by: Wenqi Li <wenqil@nvidia.com> * Revert "temp tests" This reverts commit 6a2e7a2. Signed-off-by: Wenqi Li <wenqil@nvidia.com> * Revert "temp tests" This reverts commit 9fc84df. Signed-off-by: Wenqi Li <wenqil@nvidia.com> Co-authored-by: Eric Kerfoot <17726042+ericspod@users.noreply.github.com>

* create meta data key if necessary Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * add orientationd too Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>

* update build option Signed-off-by: Wenqi Li <wenqil@nvidia.com> * temp test Signed-off-by: Wenqi Li <wenqil@nvidia.com> * Revert "temp test" This reverts commit f22cdeb. Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Signed-off-by: masadcv <muhammad.asad@kcl.ac.uk>

* fixes subprocess transforms Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> * add SelectItemsd alias Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* Temporarily changing crf test to allow some errors Signed-off-by: chaliebudd <charles.budd@kcl.ac.uk> * changing to unittest assert Signed-off-by: chaliebudd <charles.budd@kcl.ac.uk> Co-authored-by: Wenqi Li <wenqil@nvidia.com>

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* Implement ToCupy Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Add unittests for ToCupy and ToCupyd Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Add docs Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Reformat Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Add CuPy to NumPy Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Add unittests for ToNumpy and ToNumpyd for CuPy input Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com> * Add has_cp Signed-off-by: Behrooz <3968947+behxyz@users.noreply.github.com>

* Transposed Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * convert numpy array to list Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>

* skip most recent pytype Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * avoid pytype 2021.05.04 Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * pytype<2021 Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * old attrs Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>

* skip RandAffine if possible Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * add randaffined Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * mypy fix Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * check consistency Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>

* [DLMED] use shutil.move instead Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com>

This reverts commit 9c62769. Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* [DLMED] add notnans to summary Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix bug in the dist test Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] enhance the percent Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] update tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>

fix cachedataset w persistent workers problem by deep copying first non-deterministic transform

* [DLMED] fix ToNumpy Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] enhance for scalar tensor Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] remove redundant logic Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add doc-string for img Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>

* [DLMED] fix tests for PyTorch 1.5 Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] simplify the tests Signed-off-by: Nic Ma <nma@nvidia.com>

* update lmdbdataset Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * docstring and less verbose progressbar Signed-off-by: Wenqi Li <wenqil@nvidia.com> * docstring Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* adds a release note for 0.6.0 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Signed-off-by: Mohammad Adil <madil@nvidia.com>

* adds whats new 0.6 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update docs Signed-off-by: Wenqi Li <wenqil@nvidia.com> * add a list Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update according to comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes typos Signed-off-by: Wenqi Li <wenqil@nvidia.com> * Revert "update lmdbdataset (#2531)" This reverts commit a980ae4. Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* update weekly dev version Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Signed-off-by: Nic Ma <nma@nvidia.com>

* add WarmupCosineSchedule,unetr docstring Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com> * add WarmupCosineSchedule,enhance unetr docstring Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* [DLMED] add separate_folder Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] enhance decollate arg of workflows Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add wiki link Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add map_classes_to_indices Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add tests for empty classes Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add all the transforms Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add tests for ClassesToIndices transforms Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add unit tests and documents Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 and add inverse tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] optimize random choice Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add check for num_samples Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add default value to ratios Signed-off-by: Nic Ma <nma@nvidia.com>

* update lmdbdataset (#2531) * update lmdbdataset Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * docstring and less verbose progressbar Signed-off-by: Wenqi Li <wenqil@nvidia.com> * docstring Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes lmdb integration tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * add docstring Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* [DLMED] add DecollateBatch handler Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add unit tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] enhance doc-string Signed-off-by: Nic Ma <nma@nvidia.com> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com> * [DLMED] skip in min tests Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] remove rep_scalar option Signed-off-by: Nic Ma <nma@nvidia.com> Co-authored-by: monai-bot <monai.miccai2019@gmail.com>

* [DLMED] enhance pad method Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add set_to_none arg Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

* add UNETR to 'what's new in 0.6.0' page Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com> * add UNETR to 'what's new in 0.6.0' page Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>

…alLoss (#2614) * [DLMED] enhance doc Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typp Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add get_loss_details Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] enhance the doc-string Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update DiceCELoss to provide API to compute CE Signed-off-by: Nic Ma <nma@nvidia.com>

* fix synthetic bugs Signed-off-by: Yiheng Wang <vennw@nvidia.com> * add unittest Signed-off-by: Yiheng Wang <vennw@nvidia.com> * add prameter keys Signed-off-by: Yiheng Wang <vennw@nvidia.com> * add parameter keys Signed-off-by: Yiheng Wang <vennw@nvidia.com>

* adds look_up_options Signed-off-by: Wenqi Li <wenqil@nvidia.com> * adds docstring example Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update enum look ups Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes typos Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Signed-off-by: Nic Ma <nma@nvidia.com>

* fixes itk reader Signed-off-by: Wenqi Li <wenqil@nvidia.com> * adds consistency tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * multichannel RW support Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes integration Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update Signed-off-by: Wenqi Li <wenqil@nvidia.com> * revert answer Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes integration Signed-off-by: Wenqi Li <wenqil@nvidia.com> * revert unused changes Signed-off-by: Wenqi Li <wenqil@nvidia.com> * formatting Signed-off-by: Wenqi Li <wenqil@nvidia.com> * resume tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * fixes semaphore leak Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update spatial rank get Signed-off-by: Wenqi Li <wenqil@nvidia.com> * adds integration tests Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> * workaround semaphore leak Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Nic-Ma and others added 30 commits April 27, 2021 02:00

2092 Enhance NIfTI writer logging (#2093)

8f2856d

* [DLMED] add logging Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

[DLMED] add flag (#2094)

5eb9198

Signed-off-by: Nic Ma <nma@nvidia.com>

2095 fix multi-gpu issue in ClassificationSaver (#2096)

9e1a7d4

* [DLMED] fix classification issue Signed-off-by: Nic Ma <nma@nvidia.com>

Add detach to the tensors in handlers (#2100)

feb3a33

* [DLMED] add detach for Tensor Signed-off-by: Nic Ma <nma@nvidia.com> * fixes test Signed-off-by: Wenqi Li <wenqil@nvidia.com> Co-authored-by: Wenqi Li <wenqil@nvidia.com>

Adding error messaging for unsupported tensor shapes (#2089)

1f2247e

* adding error messaging for unsupported tensor shapes Signed-off-by: chaliebudd <charles.budd@kcl.ac.uk> * [MONAI] python code formatting Signed-off-by: monai-bot <monai.miccai2019@gmail.com>

2103 Add deepcopy to PosNegCrop transform (#2104)

12f267c

* [DLMED] fix shallow copy issue Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] add patch_index to RandWeightedCrop Signed-off-by: Nic Ma <nma@nvidia.com>

only pip install cucim if on linux (#2106)

304d1a8

Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>

re-enable dev branch tests (#2107)

8bb08a8

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

[DLMED] improve doc-string of partition_dataset (#2109)

299f2c2

Signed-off-by: Nic Ma <nma@nvidia.com>

fix SegResNetVAE docstring to match args (#2113)

06fd8fe

Signed-off-by: Jeff VanOss <vanossj@gmail.com>

2111 - adds a map_items option to compose (#2112)

198cd2f

* update compose Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com>

create meta data key if necessary (#2119)

d93df0e

* create meta data key if necessary Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * add orientationd too Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>

2118 speed up quick test (#2120)

fd9081b

* update build option Signed-off-by: Wenqi Li <wenqil@nvidia.com> * temp test Signed-off-by: Wenqi Li <wenqil@nvidia.com> * Revert "temp test" This reverts commit f22cdeb. Signed-off-by: Wenqi Li <wenqil@nvidia.com>

efficientnet mypy fix BlockArgs class and unittest (#2126)

2db93d8

Signed-off-by: masadcv <muhammad.asad@kcl.ac.uk>

2122 - fixes subprocess transforms (#2128)

45c6cf6

* fixes subprocess transforms Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> * add SelectItemsd alias Signed-off-by: Wenqi Li <wenqil@nvidia.com>

remove requirements workaround (#2134)

e6b7787

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

remove default cache_dir None (#2137)

3affd03

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Transposed (#2144)

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* Transposed Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com> * convert numpy array to list Signed-off-by: Richard Brown <33289025+rijobro@users.noreply.github.com>

Revert "Pytype fix (#2153)" (#2157)

2a4c9e5

This reverts commit 9c62769. Signed-off-by: Wenqi Li <wenqil@nvidia.com>

fix cachedataset w persistent workers problem by deep copying (#2121)

4259151

fix cachedataset w persistent workers problem by deep copying first non-deterministic transform

Nic-Ma and others added 29 commits July 8, 2021 05:03

2552 Fix ToNumpy issue with 0-dim data (#2553)

4ece449

* [DLMED] fix ToNumpy Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix flake8 Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

2556 Fix EnsureType test error in PyTorch 1.5.1 (#2558)

66bc397

* [DLMED] fix tests for PyTorch 1.5 Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] simplify the tests Signed-off-by: Nic Ma <nma@nvidia.com>

2488 adds a release note for 0.6.0 (#2520)

342b424

* adds a release note for 0.6.0 Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update based on comments Signed-off-by: Wenqi Li <wenqil@nvidia.com> * update Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Remove concurrency limit from blossom CI (#2559)

9a83660

Signed-off-by: Mohammad Adil <madil@nvidia.com>

update weekly dev version (#2561)

8365443

* update weekly dev version Signed-off-by: Wenqi Li <wenqil@nvidia.com>

[DLMED] fix wrong link in README (#2564)

cad300a

Signed-off-by: Nic Ma <nma@nvidia.com>

[DLMED] add return to SaveImage (#2568)

3edff74

Signed-off-by: Nic Ma <nma@nvidia.com>

add WarmupCosineSchedule, UNETR & ViT Docstrings (#2545)

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* add WarmupCosineSchedule,unetr docstring Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com> * add WarmupCosineSchedule,enhance unetr docstring Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>

update highlights (#2579)

f420d99

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

2562 Add support to not save data in a separate folder (#2576)

daf2c4f

* [DLMED] add separate_folder Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

2571 enhance decollate arg of workflows (#2577)

9818467

* [DLMED] enhance decollate arg of workflows Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

2571 add wiki link to the release note (#2585)

cbc8941

* [DLMED] add wiki link Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typo Signed-off-by: Nic Ma <nma@nvidia.com>

2590 Add more pad args in ResizeWithPadOrCrop transform (#2594)

ada5502

* [DLMED] enhance pad method Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

Fixes typos (#2591)

6e02506

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

[DLMED] enhance all the SpatialPad related (#2597)

813368b

Signed-off-by: Nic Ma <nma@nvidia.com>

2595 Add support for the set_to_none arg in optimizer (#2596)

66b226b

* [DLMED] add set_to_none arg Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update according to comments Signed-off-by: Nic Ma <nma@nvidia.com>

add UNETR to 'what's new in 0.6.0' page (#2603)

af0d51b

* add UNETR to 'what's new in 0.6.0' page Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com> * add UNETR to 'what's new in 0.6.0' page Signed-off-by: ahatamizadeh <ahatamizadeh@nvidia.com>

2612 Enhance doc-string for activation args of DiceCELoss and DiceFoc…

830f8bb

…alLoss (#2614) * [DLMED] enhance doc Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] fix typp Signed-off-by: Nic Ma <nma@nvidia.com>

2604 Get raw loss values of hybrid loss (#2605)

f943ab4

* [DLMED] add get_loss_details Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] enhance the doc-string Signed-off-by: Nic Ma <nma@nvidia.com> * [DLMED] update DiceCELoss to provide API to compute CE Signed-off-by: Nic Ma <nma@nvidia.com>

[DLMED] enhance distance metrics warning (#2638)

0266743

Signed-off-by: Nic Ma <nma@nvidia.com>

Nic-Ma merged commit 6f87afd into Nic-Ma:main Jul 22, 2021

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merge master #180

merge master #180

Nic-Ma commented Jul 22, 2021

merge master #180

merge master #180

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Nic-Ma commented Jul 22, 2021

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