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Testing of the Marine DA jjobs #234

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merged 16 commits into from
Dec 14, 2022
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Merged

Testing of the Marine DA jjobs #234

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0342aa0
blank ctests for jjobs
guillaumevernieres Dec 5, 2022
e3ea02c
works but needs tidy
guillaumevernieres Dec 6, 2022
8271d02
fname too long for fms ...
guillaumevernieres Dec 6, 2022
c2938a3
Merge branch 'develop' into feature/ctest_ocnice_3dvar
guillaumevernieres Dec 7, 2022
056e266
some code tidy
guillaumevernieres Dec 7, 2022
8bae5e3
removed debug prints
guillaumevernieres Dec 7, 2022
5c19287
replacing machine in config
guillaumevernieres Dec 7, 2022
b057526
copy bkg
guillaumevernieres Dec 8, 2022
8fcde59
Merge branch 'develop' into feature/ctest_ocnice_3dvar
guillaumevernieres Dec 12, 2022
59c4bde
manual merge of prep script
guillaumevernieres Dec 12, 2022
cd08254
adjusted a few things related to jjob refactor ...
guillaumevernieres Dec 12, 2022
7632cbf
tidy ... some and local2hpc
guillaumevernieres Dec 13, 2022
1803f48
code tidy and some shellcheck
guillaumevernieres Dec 13, 2022
c033216
Merge branch 'develop' into feature/ctest_ocnice_3dvar
guillaumevernieres Dec 13, 2022
8d5c10e
bomb obs, fix yaml
guillaumevernieres Dec 14, 2022
f890ccd
clean exp
guillaumevernieres Dec 14, 2022
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6 changes: 2 additions & 4 deletions scripts/exgdas_global_marine_analysis_prep.py
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Original file line number Diff line number Diff line change
Expand Up @@ -41,8 +41,7 @@
my_home = os.path.dirname(os.path.dirname(my_dir))
gdas_home = os.path.join(os.getenv('HOMEgfs'), 'sorc', 'gdas.cd')
sys.path.append(os.path.join(os.getenv('HOMEgfs', my_home), 'ush'))
print(f"sys.path={sys.path}")

sys.path.append(os.path.join(gdas_home, 'ush'))
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# import UFSDA utilities
import ufsda
Expand Down Expand Up @@ -149,8 +148,7 @@ def gen_bkg_list(window_begin=' ', bkg_path='.', file_type='gdas.t*.ocnf00[3-9]'
# create output directory for soca DA
anl_out = os.path.join(comout, 'ocnanal_'+os.getenv('CDATE'), 'Data')
ufsda.mkdir(anl_out)
ufsda.symlink(os.path.join(anl_dir, 'Data'), anl_out, remove=False)

ufsda.symlink(anl_out, os.path.join(anl_dir, 'Data'), remove=False)
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################################################################################
# fetch observations
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5 changes: 5 additions & 0 deletions test/soca/CMakeLists.txt
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Expand Up @@ -97,3 +97,8 @@ set_tests_properties(test_gdasapp_soca_ana_run
PROPERTIES
DEPENDS "test_gdasapp_soca_ana_prep"
)

# Test exgdas scripts from the global-worflow
if (WORKFLOW_TESTS)
add_subdirectory(gw)
endif()
17 changes: 17 additions & 0 deletions test/soca/gw/CMakeLists.txt
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@@ -0,0 +1,17 @@
# test for creating an experiment directory within the global-workflow
file(MAKE_DIRECTORY ${PROJECT_BINARY_DIR}/test/soca/gw/testrun)

add_test(NAME test_gdasapp_setup_soca_cycled_exp
COMMAND ${PROJECT_SOURCE_DIR}/test/soca/gw/setup_workflow_exp.sh
${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/soca/gw/testrun)

add_test(NAME test_gdasapp_soca_jjob_soca_prep
COMMAND ${PROJECT_SOURCE_DIR}/test/soca/gw/jjob_prep.sh
${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/soca/gw/testrun)

add_test(NAME test_gdasapp_soca_jjob_soca_run
COMMAND ${PROJECT_SOURCE_DIR}/test/soca/gw/jjob_run.sh
${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}
WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/soca/gw/testrun)
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