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Yamls for MIRS type sea-ice obs in cycling test #1257

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merged 10 commits into from
Sep 24, 2024
Merged

Yamls for MIRS type sea-ice obs in cycling test #1257

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eb03517
yaml for MIRS_NPP icec obs in cycling
apchoiCMD Aug 20, 2024
9b6c0de
commented out not ci part
apchoiCMD Sep 10, 2024
6d787ea
Merge branch 'develop' into feature/icec_mirs_yaml
guillaumevernieres Sep 10, 2024
9ae2043
fine name conventions
apchoiCMD Sep 12, 2024
398f300
minor change
apchoiCMD Sep 12, 2024
e2dd7d2
Merge branch 'develop' into feature/icec_mirs_yaml
apchoiCMD Sep 12, 2024
6de9f3d
filename conventions
apchoiCMD Sep 24, 2024
1c82489
clean up
apchoiCMD Sep 24, 2024
dfa3b28
match with sst
apchoiCMD Sep 24, 2024
9be6509
Merge branch 'develop' into feature/icec_mirs_yaml
apchoiCMD Sep 24, 2024
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45 changes: 45 additions & 0 deletions parm/soca/obs/config/icec_amsu_mb_l2.yaml
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obs space:
name: icec_amsu_mb_l2
obsdatain:
engine:
type: H5File
obsfile: !ENV ${DATA}/obs/${OPREFIX}icec_amsu_mb_l2.${PDY}${cyc}.nc4
obsdataout:
engine:
type: H5File
obsfile: !ENV ${DATA}/diags/icec_amsu_mb_l2.${PDY}${cyc}.nc4
simulated variables: [seaIceFraction]
io pool:
max pool size: 1
get values:
time interpolation: linear
obs operator:
name: Identity
observation alias file: obsop_name_map.yaml
obs error:
covariance model: diagonal
obs filters:
- filter: Domain Check
where:
- variable: {name: GeoVaLs/sea_area_fraction}
minvalue: 0.9
- filter: Bounds Check
minvalue: 0.0
maxvalue: 1.0
#- filter: Background Check
# threshold: 5.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 2.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 0.0
action:
name: inflate error
inflation factor: 2.0
- filter: Domain Check
where:
- variable: {name: GeoVaLs/distance_from_coast}
minvalue: 100e3
45 changes: 45 additions & 0 deletions parm/soca/obs/config/icec_atms_n20_l2.yaml
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obs space:
name: icec_atms_n20_l2
obsdatain:
engine:
type: H5File
obsfile: !ENV ${DATA}/obs/${OPREFIX}icec_atms_n20_l2.{PDY}${cyc}.nc4
obsdataout:
engine:
type: H5File
obsfile: !ENV ${DATA}/diags/icec_atms_n20_l2.${PDY}${cyc}.nc4
simulated variables: [seaIceFraction]
io pool:
max pool size: 1
get values:
time interpolation: linear
obs operator:
name: Identity
observation alias file: obsop_name_map.yaml
obs error:
covariance model: diagonal
obs filters:
- filter: Domain Check
where:
- variable: {name: GeoVaLs/sea_area_fraction}
minvalue: 0.9
- filter: Bounds Check
minvalue: 0.0
maxvalue: 1.0
#- filter: Background Check
# threshold: 5.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 2.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 0.0
action:
name: inflate error
inflation factor: 2.0
- filter: Domain Check
where:
- variable: {name: GeoVaLs/distance_from_coast}
minvalue: 100e3
45 changes: 45 additions & 0 deletions parm/soca/obs/config/icec_atms_n21_l2.yaml
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obs space:
name: icec_atms_n21_l2
obsdatain:
engine:
type: H5File
obsfile: !ENV ${DATA}/obs/${OPREFIX}icec_atms_n21_l2.{PDY}${cyc}.nc4
obsdataout:
engine:
type: H5File
obsfile: !ENV ${DATA}/diags/icec_atms_n21_l2.${PDY}${cyc}.nc4
simulated variables: [seaIceFraction]
io pool:
max pool size: 1
get values:
time interpolation: linear
obs operator:
name: Identity
observation alias file: obsop_name_map.yaml
obs error:
covariance model: diagonal
obs filters:
- filter: Domain Check
where:
- variable: {name: GeoVaLs/sea_area_fraction}
minvalue: 0.9
- filter: Bounds Check
minvalue: 0.0
maxvalue: 1.0
#- filter: Background Check
# threshold: 5.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 2.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 0.0
action:
name: inflate error
inflation factor: 2.0
- filter: Domain Check
where:
- variable: {name: GeoVaLs/distance_from_coast}
minvalue: 100e3
45 changes: 45 additions & 0 deletions parm/soca/obs/config/icec_atms_npp_l2.yaml
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obs space:
name: icec_atms_npp_l2
obsdatain:
engine:
type: H5File
obsfile: !ENV ${DATA}/obs/${OPREFIX}icec_atms_npp_l2.{PDY}${cyc}.nc4
obsdataout:
engine:
type: H5File
obsfile: !ENV ${DATA}/diags/icec_atms_npp_l2.${PDY}${cyc}.nc4
simulated variables: [seaIceFraction]
io pool:
max pool size: 1
get values:
time interpolation: linear
obs operator:
name: Identity
observation alias file: obsop_name_map.yaml
obs error:
covariance model: diagonal
obs filters:
- filter: Domain Check
where:
- variable: {name: GeoVaLs/sea_area_fraction}
minvalue: 0.9
- filter: Bounds Check
minvalue: 0.0
maxvalue: 1.0
#- filter: Background Check
# threshold: 5.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 2.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 0.0
action:
name: inflate error
inflation factor: 2.0
- filter: Domain Check
where:
- variable: {name: GeoVaLs/distance_from_coast}
minvalue: 100e3
45 changes: 45 additions & 0 deletions parm/soca/obs/config/icec_gmi_gpm_l2.yaml
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obs space:
name: icec_gmi_gpm_l2
obsdatain:
engine:
type: H5File
obsfile: !ENV ${DATA}/obs/${OPREFIX}icec_gmi_gpm_l2.${PDY}${cyc}.nc4
obsdataout:
engine:
type: H5File
obsfile: !ENV ${DATA}/diags/icec_gmi_gpm_l2.${PDY}${cyc}.nc4
simulated variables: [seaIceFraction]
io pool:
max pool size: 1
get values:
time interpolation: linear
obs operator:
name: Identity
observation alias file: obsop_name_map.yaml
obs error:
covariance model: diagonal
obs filters:
- filter: Domain Check
where:
- variable: {name: GeoVaLs/sea_area_fraction}
minvalue: 0.9
- filter: Bounds Check
minvalue: 0.0
maxvalue: 1.0
#- filter: Background Check
# threshold: 5.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 2.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 0.0
action:
name: inflate error
inflation factor: 2.0
- filter: Domain Check
where:
- variable: {name: GeoVaLs/distance_from_coast}
minvalue: 100e3
45 changes: 45 additions & 0 deletions parm/soca/obs/config/icec_ssmis_f17_l2.yaml
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obs space:
name: icec_ssmis_f17_l2
obsdatain:
engine:
type: H5File
obsfile: !ENV ${DATA}/obs/${OPREFIX}icec_ssmis_f17_l2.${PDY}${cyc}.nc4
obsdataout:
engine:
type: H5File
obsfile: !ENV ${DATA}/diags/icec_ssmis_f17_l2.${PDY}${cyc}.nc4
simulated variables: [seaIceFraction]
io pool:
max pool size: 1
get values:
time interpolation: linear
obs operator:
name: Identity
observation alias file: obsop_name_map.yaml
obs error:
covariance model: diagonal
obs filters:
- filter: Domain Check
where:
- variable: {name: GeoVaLs/sea_area_fraction}
minvalue: 0.9
- filter: Bounds Check
minvalue: 0.0
maxvalue: 1.0
#- filter: Background Check
# threshold: 5.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 2.0
- filter: Domain Check
where:
- variable: { name: GeoVaLs/sea_surface_temperature}
maxvalue: 0.0
action:
name: inflate error
inflation factor: 2.0
- filter: Domain Check
where:
- variable: {name: GeoVaLs/distance_from_coast}
minvalue: 100e3
6 changes: 6 additions & 0 deletions parm/soca/obs/obs_list.yaml
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Expand Up @@ -15,6 +15,12 @@ observers:
# Ice concentration
- !INC ${MARINE_OBS_YAML_DIR}/icec_amsr2_north.yaml
- !INC ${MARINE_OBS_YAML_DIR}/icec_amsr2_south.yaml
#- !INC ${MARINE_OBS_YAML_DIR}/icec_amsu_mb_l2.yaml
#- !INC ${MARINE_OBS_YAML_DIR}/icec_atms_n20_l2.yaml
#- !INC ${MARINE_OBS_YAML_DIR}/icec_atms_n21_l2.yaml
#- !INC ${MARINE_OBS_YAML_DIR}/icec_atms_npp_l2.yaml
#- !INC ${MARINE_OBS_YAML_DIR}/icec_gmi_gpm_l2.yaml
#- !INC ${MARINE_OBS_YAML_DIR}/icec_ssmis_f17_l2.yaml

# in situ: monthly
#- !INC ${MARINE_OBS_YAML_DIR}/insitu_profile_bathy.yaml
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48 changes: 48 additions & 0 deletions parm/soca/obsprep/obsprep_config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -46,6 +46,54 @@ observations:
dmpdir regex: 'AMSR2-SEAICE-SH_v2r2_GW1_s*.nc'
ocean basin: RECCAP2_region_masks_all_v20221025.nc

- obs space:
name: icec_amsu_mb_l2
provider: MIRS
dmpdir subdir: ocean/icec
type: nc
dmpdir regex: 'NPR-MIRS-IMG_v11r9_ma1_s*.nc'
ocean basin: RECCAP2_region_masks_all_v20221025.nc

- obs space:
name: icec_atms_n20_l2
provider: MIRS
dmpdir subdir: ocean/icec
type: nc
dmpdir regex: 'NPR-MIRS-IMG_v11r9_n20_s*.nc'
ocean basin: RECCAP2_region_masks_all_v20221025.nc

- obs space:
name: icec_atms_n21_l2
provider: MIRS
dmpdir subdir: ocean/icec
type: nc
dmpdir regex: 'NPR-MIRS-IMG_v11r9_n21_s*.nc'
ocean basin: RECCAP2_region_masks_all_v20221025.nc

- obs space:
name: icec_atms_npp_l2
provider: MIRS
dmpdir subdir: ocean/icec
type: nc
dmpdir regex: 'NPR-MIRS-IMG_v11r4_npp_s*.nc'
ocean basin: RECCAP2_region_masks_all_v20221025.nc

- obs space:
name: icec_gmi_gpm_l2
provider: MIRS
dmpdir subdir: ocean/icec
type: nc
dmpdir regex: 'NPR-MIRS-IMG_v11r9_gpm_s*.nc'
ocean basin: RECCAP2_region_masks_all_v20221025.nc

- obs space:
name: icec_ssmis_f17_l2
provider: MIRS
dmpdir subdir: ocean/icec
type: nc
dmpdir regex: 'NPR-MIRS-IMG_v11r4_f17_s*.nc'
ocean basin: RECCAP2_region_masks_all_v20221025.nc

# SST
- obs space:
name: sst_avhrr_ma_l3u
Expand Down
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