Split the soca run jjob

[guillaumevernieres]

Description

Isolate soca_var.x in one jjob only, move the other executables to a separate, dedicated jjob. Not ideal yet, but arguably closer to perfection!

Stuff to do

Create a new script in this repo and a new jjob in the g-w that will contain the JEDI executables in exgdas_global_marine_analysis_run.sh between L88 and L133

Suggested name for the script: exgdas_global_marine_analysis_bmat.sh ?

To be discussed with @AndrewEichmann-NOAA

[AndrewEichmann-NOAA]

@guillaumevernieres So are we shooting for all of the APRUN calls to have their own scripts?

[AndrewEichmann-NOAA]

The goal for now will be to split the soca_var.x executable call from the previous ones, so that it has its own script and j-job that runs in the current workflow-enabled ctests within GDASApp, with the eventual goal of having separate tasks within the rocoto workflow.

[AndrewEichmann-NOAA]

Partially addressed by #272

[AndrewEichmann-NOAA]

@guillaumevernieres Do we want a separate g-w config file for JGDAS_GLOBAL_OCEAN_ANALYSIS_BMAT, either now or in the future? Right now it does fine with configs="base ocnanal ocnanalrun", and I don't know how strictly the g-w people would want a separate one. With EFSOI there was some resistance to a proliferation of config files.

[guillaumevernieres]

@guillaumevernieres Do we want a separate g-w config file for JGDAS_GLOBAL_OCEAN_ANALYSIS_BMAT, either now or in the future? Right now it does fine with configs="base ocnanal ocnanalrun", and I don't know how strictly the g-w people would want a separate one. With EFSOI there was some resistance to a proliferation of config files.

It's probably OK for now @AndrewEichmann-NOAA . Your j-job will use the same resources as the "run" j-job, but the completion time should be a lot less than running the DA, that's the one difference that I can think of ... I'm sure I'm missing something, but that can be pushed down to your next PR that will add the dependencies of that j-job.

[guillaumevernieres]

Thanks @AndrewEichmann-NOAA ... better you than me :)
Done so closing.