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simplify stoichiometry_matrix API & make it more efficient #147

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merged 2 commits into from
Aug 18, 2021

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@exaexa exaexa commented Aug 18, 2021

Writing individual fields to sparse matrices is pretty slow, this should be faster in most cases. More or less a consequence of LCSB-BioCore/COBREXA.jl#443 .

@exaexa exaexa requested a review from giordano August 18, 2021 13:05
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codecov bot commented Aug 18, 2021

Codecov Report

Merging #147 (3c2c3af) into master (1bd9216) will increase coverage by 0.38%.
The diff coverage is 100.00%.

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@@            Coverage Diff             @@
##           master     #147      +/-   ##
==========================================
+ Coverage   92.71%   93.10%   +0.38%     
==========================================
  Files           8        8              
  Lines         302      319      +17     
==========================================
+ Hits          280      297      +17     
  Misses         22       22              
Impacted Files Coverage Δ
src/utils.jl 95.00% <100.00%> (+1.34%) ⬆️

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src/utils.jl Outdated Show resolved Hide resolved
@exaexa exaexa merged commit 2043139 into master Aug 18, 2021
@exaexa exaexa deleted the mk-sparse-stoi branch August 18, 2021 14:19
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2 participants