Merge pull request #291 from LCSB-BioCore/mo-no-mo-vmh

Deleted unnecessary dependency Former-commit-id: 8372bd2
LCSB-BioCore · Jun 1, 2021 · a75f3d6 · a75f3d6
2 parents 1e0d0d4 + 717ff7a
commit a75f3d6
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Showing 3 changed files with 8 additions and 9 deletions.
diff --git a/.gitignore b/.gitignore
@@ -36,3 +36,7 @@ docs/src/notebooks/
 docs/src/index.md
 docs/src/howToContribute.md
 docs/src/assets/output.gif
+
+# ignore anything generated by tests
+test/data
+test/downloaded
diff --git a/test/data_downloaded.jl b/test/data_downloaded.jl
@@ -48,11 +48,6 @@ model_paths = Dict{String,String}(
         df("e_coli_core.json"),
         "7bedec10576cfe935b19218dc881f3fb14f890a1871448fc19a9b4ee15b448d8",
     ),
-    "mycoplasma-23114.mat" => download_data_file(
-        "https://www.vmh.life/files/reconstructions/AGORA/1.03/reconstructions/mat/Mycoplasma_hominis_ATCC_23114.mat",
-        df("mycoplasma-23114.mat"),
-        "03362073aa917f0691a0c896948f6e8eebe47f02dcbe0c3f00275fa87396e220",
-    ),
     "iJR904.mat" => download_data_file(
         "http://bigg.ucsd.edu/static/models/iJR904.mat",
         df("iJR904.mat"),

diff --git a/test/io/mat.jl b/test/io/mat.jl
@@ -1,13 +1,13 @@
 
 @testset "Import MAT model" begin
-    cp = load_model(CoreModel, model_paths["mycoplasma-23114.mat"])
+    cp = load_model(CoreModel, model_paths["iJR904.mat"])
     @test cp isa CoreModel
-    @test size(cp.S) == (475, 496)
+    @test size(cp.S) == (761, 1075)
 end
 
 @testset "Save MAT model" begin
-    testpath = tmpfile("mycoplasma-clone.mat")
-    loaded = load_model(CoreModel, model_paths["mycoplasma-23114.mat"])
+    testpath = tmpfile("iJR904-clone.mat")
+    loaded = load_model(CoreModel, model_paths["iJR904.mat"])
     save_model(loaded, testpath)
     wrote = load_model(CoreModel, testpath)
     @test wrote isa CoreModel