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1. Work-Samples Work-Samples Public

   This repository has a collection of bioinformatics assessments and analyses demonstrating proficiency in ML and next-generation sequencing (NGS) data analysis.

   Jupyter Notebook

2. Glioma-ML-Classifier-with-ANOVA-Feature-Selection Glioma-ML-Classifier-with-ANOVA-Feature-Selection Public

   Pipeline using TCGA data to classify glioma subtypes using machine learning models. The pipeline includes data preprocessing, ANOVA-based feature selection, and model training using Logistic Regres…

   Jupyter Notebook

3. ChIP-Seq-Nexflow-Pipeline ChIP-Seq-Nexflow-Pipeline Public

   Nextflow DSL2 ChIP-Seq analysis pipeline including quality control, alignment, peak calling, blacklist filtering, annotation, motif analysis, and visualization.

   Nextflow

4. scRNASeq-cancer-cell-line scRNASeq-cancer-cell-line Public

   Analysis of scRNA-seq data from cancer cell lines using Python (Scanpy) to explore the potential application of antibody therapies such as Trastuzumab and Bevacizumab in additional cancers.

   Jupyter Notebook

5. LCS-dynamic-programming LCS-dynamic-programming Public

   Python implementation of LCS using dynamic programming. Submission for EN.605.620 Algorithms for Bioinformatics.

   Python

6. WES-Variant-Calling WES-Variant-Calling Public

   Shell workflow designed to process Whole Exome Sequencing (WES) data following GATK4 best practices for variant calling.

   HTML 1