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@HIVDiversity

HIV Diversity Group

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  1. MotifBinner2 MotifBinner2 Public

    R 2 1

  2. clustering_by_hdbscan clustering_by_hdbscan Public

    create haplotypes of unaligned DNA sequences using kmer counts and hdbscan

    Python 1

  3. Samuel_Kariuki Samuel_Kariuki Public

    work and code for Samuel Kariuki

    Python

  4. NGS_analysis_pipeline NGS_analysis_pipeline Public

    Forked from ColinAnthony/NGS_analysis_pipeline

    Python

  5. NGS_processing_pipeline NGS_processing_pipeline Public

    Forked from ColinAnthony/NGS_processing_pipeline

    Python

  6. small_bix_tools small_bix_tools Public

    Python

Repositories

Showing 10 of 18 repositories
  • expand-fasta Public
    HIVDiversity/expand-fasta’s past year of commit activity
    Python 0 0 0 0 Updated Nov 11, 2024
  • HIVDiversity.github.io Public

    github IO page for the lab

    HIVDiversity/HIVDiversity.github.io’s past year of commit activity
    JavaScript 0 0 0 0 Updated Nov 3, 2024
  • RO1_Selection_analysis_pre_processing Public

    Preprocessing of alignments vefore doing selection analysis on lineage files

    HIVDiversity/RO1_Selection_analysis_pre_processing’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 4, 2023
  • V705_Sequence_alignment_process Public Forked from MullinsLab/Sequence_alignment_process
    HIVDiversity/V705_Sequence_alignment_process’s past year of commit activity
    Python 0 5 0 0 Updated Sep 28, 2023
  • informative_sites Public

    short piece of code to gather informative sites from alignments

    HIVDiversity/informative_sites’s past year of commit activity
    Python 0 GPL-3.0 0 1 1 Updated Jun 21, 2022
  • cluster_align Public
    HIVDiversity/cluster_align’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Jun 15, 2021
  • EpitopeMatcher Public Forked from philliplab/EpitopeMatcher

    A package that can be used to find out how well the epitopes in a patient's virus' will be recognized by the HLA's present in the patient.

    HIVDiversity/EpitopeMatcher’s past year of commit activity
    R 0 2 0 0 Updated Aug 24, 2020
  • hiv_custom_sequencelogo Public Forked from ColinAnthony/hiv_custom_sequencelogo

    create a custom sequence logo from a fasta file and a list of sites to use

    HIVDiversity/hiv_custom_sequencelogo’s past year of commit activity
    Python 0 1 0 0 Updated May 13, 2020
  • clustering_by_hdbscan Public

    create haplotypes of unaligned DNA sequences using kmer counts and hdbscan

    HIVDiversity/clustering_by_hdbscan’s past year of commit activity
    Python 1 0 0 0 Updated May 13, 2020
  • Samuel_Kariuki Public

    work and code for Samuel Kariuki

    HIVDiversity/Samuel_Kariuki’s past year of commit activity
    Python 0 0 0 0 Updated Oct 1, 2019
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