hiv_custom_sequencelogo

This script is designed to take a full gene (or partial gene) amino acid sequence alignment of HIV sequences (must include HXB2) and create a custom sequence logo using a list of sites provided in a csv file

Requirements

python v3.6>

conda install -c anaconda pandas

conda install -c bioconda weblogo

• A sequence alignment containing HXB2

• A csv file listing the sites to include in a column

  • This file must contain the column heading "sites"