Update Github actions

.github/workflows/R-CMD-check.yaml

@@ -47,15 +47,13 @@ jobs:
           git clone git@github.com:Gilead-BioStats/clindata.git
           cd gsm
 
-      - name: load clindata
+      - name: install packages
         shell: Rscript {0}
         run: |
           install.packages("devtools")
-          devtools::load_all('../clindata')
-
-      - uses: r-lib/actions/setup-r-dependencies@v1
-        with:
-          extra-packages: rcmdcheck
+          devtools::install('../clindata')
+          devtools::install(dependencies=TRUE)
+          install.packages('rcmdcheck')
 
       - uses: r-lib/actions/check-r-package@v1
 

.github/workflows/test-coverage.yaml

@@ -15,16 +15,30 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
+      - uses: webfactory/ssh-agent@v0.5.4
+        with:
+          ssh-private-key: ${{ secrets.LOAD_CLINDATA }}
+
       - uses: actions/checkout@v2
 
       - uses: r-lib/actions/setup-r@v1
         with:
           use-public-rspm: true
 
-      - uses: r-lib/actions/setup-r-dependencies@v1
-        with:
-          extra-packages: covr
+      - name: Clone clindata
+        run: |
+          cd ..
+          git clone git@github.com:Gilead-BioStats/clindata.git
+          cd gsm
+
+      - name: install packages
+        shell: Rscript {0}
+        run: |
+          install.packages("devtools")
+          devtools::install('../clindata')
+          devtools::install(dependencies=TRUE)
+          install.packages('covr')
 
       - name: Test coverage
-        run: covr::codecov()
+        run: covr::package_coverage()
         shell: Rscript {0}

DESCRIPTION

@@ -19,8 +19,8 @@ Suggests:
     covr,
     clindata
 LazyData: true
+Remotes: 
+    phuse-org/valtools
 Roxygen: list(markdown = TRUE)
-Remotes:
-    Gilead-BioStats/clindata
 RoxygenNote: 7.1.2
 Config/testthat/edition: 3