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Allow segments to be null #220

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fengelniederhammer opened this issue Oct 25, 2023 · 1 comment · Fixed by #239
Closed

Allow segments to be null #220

fengelniederhammer opened this issue Oct 25, 2023 · 1 comment · Fixed by #239
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We don't want to require that all sequences have all segments or genes present. Instead allow that some segments/genes are null.
@fengelniederhammer fengelniederhammer mentioned this issue Oct 25, 2023
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@fengelniederhammer fengelniederhammer mentioned this issue Dec 4, 2023
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#239 contains example data.

@fengelniederhammer fengelniederhammer self-assigned this Jan 18, 2024
fengelniederhammer added a commit that referenced this issue Jan 19, 2024
@fengelniederhammer
feat: allow reading segments and genes that are null from ndjson file #…
22b5a56 
…220
fengelniederhammer added a commit that referenced this issue Jan 19, 2024
@fengelniederhammer
refactor: reduce cognitive complexity #220
1204172
fengelniederhammer added a commit that referenced this issue Jan 19, 2024
@fengelniederhammer
feat: allow reading segments and genes that are null from ndjson file #…
77eb32d 
…220
fengelniederhammer added a commit that referenced this issue Jan 19, 2024
@fengelniederhammer
refactor: reduce cognitive complexity #220
5404a6d
fengelniederhammer added a commit that referenced this issue Jan 19, 2024
@fengelniederhammer
feat: allow reading fasta files with missing segments and genes #220
da59a38
fengelniederhammer added a commit that referenced this issue Jan 19, 2024
@fengelniederhammer
refactor: extract function #220
4f7aee7
fengelniederhammer added a commit that referenced this issue Jan 22, 2024
@fengelniederhammer
feat: allow reading segments and genes that are null from ndjson file #…
a8a9c89 
…220
fengelniederhammer added a commit that referenced this issue Jan 22, 2024
@fengelniederhammer
refactor: reduce cognitive complexity #220
e17bb46
fengelniederhammer added a commit that referenced this issue Jan 22, 2024
@fengelniederhammer
feat: allow reading fasta files with missing segments and genes #220
895d4f7
fengelniederhammer added a commit that referenced this issue Jan 22, 2024
@fengelniederhammer
refactor: extract function #220
dcfaccb
fengelniederhammer added a commit that referenced this issue Jan 22, 2024
@fengelniederhammer
refactor: reduce cognitive complexity #220
6f2462d
fengelniederhammer added a commit that referenced this issue Jan 22, 2024
@fengelniederhammer
feat: allow reading fasta files with missing segments and genes #220
bcb4414
fengelniederhammer added a commit that referenced this issue Jan 22, 2024
@fengelniederhammer
refactor: extract function #220
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@fengelniederhammer fengelniederhammer linked a pull request Jan 22, 2024 that will close this issue
allow missing segments and genes #239
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fengelniederhammer added a commit that referenced this issue Jan 22, 2024
@fengelniederhammer
feat: allow reading segments and genes that are null from ndjson file #…
d0a3a7e 
…220
fengelniederhammer added a commit that referenced this issue Jan 22, 2024
@fengelniederhammer
refactor: reduce cognitive complexity #220
2768602
fengelniederhammer added a commit that referenced this issue Jan 22, 2024
@fengelniederhammer
feat: allow reading fasta files with missing segments and genes #220
8ea9893
fengelniederhammer added a commit that referenced this issue Jan 22, 2024
@fengelniederhammer
refactor: extract function #220
a630faa
@theosanderson theosanderson mentioned this issue Jan 23, 2024
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This was referenced May 7, 2024
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@fengelniederhammer fengelniederhammer mentioned this issue May 17, 2024
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@github-actions github-actions bot mentioned this issue Aug 30, 2024
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This was referenced Sep 12, 2024
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allow missing segments and genes GenSpectrum/LAPIS-SILO
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