Code

Fixes for GP Modeling code#1

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Gaurav17Joshi merged 104 commits intoGaurav17Joshi:features/GPtoolGaurav17Joshi/stingray:features/GPtoolfrom dhuppenkothen:GPTool_fixesdhuppenkothen/stingray_gaurav:GPTool_fixesCopy head branch name to clipboardSep 29, 2023

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Commits on Sep 1, 2023

• Update tstart and tseg when truncating the lc

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• Add changelog

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Commits on Sep 6, 2023

• Setup tests to verify correct update of meancounts and many other attributes

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• Merge pull request StingraySoftware#753 from StingraySoftware/fix_truncate

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Commits on Sep 18, 2023

• Reduced memory usage of EventList.from_lc()

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• added changelog

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• Merge pull request StingraySoftware#756 from pupperemeritus/EventListMemoryOptimization

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Commits on Sep 20, 2023

• Speedup event creation a lot in from_lc

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• Add changelog

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• Fix non-integer counts

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• Suppress warning about figurecanvasagg

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• Merge pull request StingraySoftware#757 from StingraySoftware/speedup_to_lc_further

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• Eliminate the legacy option from crossspectrum, and the tests

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• Eliminate the legacy option from powerspectrum, and the tests

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• Eliminate large memory stuff

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• Add changelog

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• Cleanup

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• Save sub CS in fourier.py

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• Allow to save all sub spectra

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• Allow the save_all option

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• Fix docstrings [docs only]

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• Uniform names for output

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• Allow the save_all option

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• Suppress this specific test until better test in notebook

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• All no-good data options were already accounted for

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Commits on Sep 21, 2023

• Reinstate the different statistics test in crossspectrum

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• Fix behavior when only one input data set is empty

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Commits on Sep 22, 2023

• Test on Py3.11 as well

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• Mark change as breaking

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• Update notebooks [docs only]

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• Merge pull request StingraySoftware#755 from StingraySoftware/eliminate_legacy_interface

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• Fix repo reference [docs only]

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• Only run slow and fast tests in different batches

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• Mark slow tests

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• Add changelog [docs only]

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• Mark CCF test as xfailing

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• Fix bad option in pyproject

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• Add slow tests with basic dependencies only

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Commits on Sep 25, 2023

• Merge pull request StingraySoftware#758 from matteobachetti/slow_tests

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Commits on Sep 26, 2023

• LSCross,Power Spectrum Classes implemented

  

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• moved lsft funcs to fourier, added lombscargle to __init__.py

  

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• Input of lsft_slow,fast changed to be non stingray specific, added changelog,

  

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• Removed LC and eventlist imports in fourier.py

  

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• Typos and added fast version of lsft to fourier.py

  

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• Integrating fast method into the cross,power spectrum classes

  

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• Fixed the fast LSFT implementation and refactoring variable names

  

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• Added basic tests, corrected algorithms wrt papers, typos in docstrings

  

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• Documentation, Algorithm Fixes, API Change

  

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• Edited docs(core.rst,lscs,lsps), modified function, docstrings, formatting,,new tests

  

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• Fixed Tests

  

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• Improved Coverage

  

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• Comment code

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• Test time lag

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• Phase lag fixes, code cleanup and optimization

  

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• Test Coverage Improvement

  

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• Updated docs and rewrote the classes to use modern interface from AveragedCrossspectrum

  

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• Example eventlist test

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• Code Cleanup, Tests and lc warning changes

  

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• method test fix

  

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• Reintroduced ls notebooks

  

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• Removed largememory

  

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• fix for python 3.11 tests

  

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• Fix the nphots parameter

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• Import all from lombscargle

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Commits on Sep 27, 2023

• Make the autofrequency calculation more consistent and controllable

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• Test maxfreq <0

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• Allow for complex values in flux iterables

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• Don't change dt if it's already binned

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• Test

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• Add changelog [docs only]

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Commits on Sep 28, 2023

• Update notebooks

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• Add reference to Lomb-Scargle tutorial

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• Merge pull request StingraySoftware#760 from StingraySoftware/fix_powerspectrum_from_lightcurve

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• Fix missing whitespace [docs only]

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• Refresh front page [docs only]

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• Merge pull request StingraySoftware#737 from pupperemeritus/LombScargle

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Commits on Sep 29, 2023

• Adding_gp_feature

  

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• Added skew means

  

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• Added fred model

  

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• Combined GP, GPR class

  

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• Added kernel, mean tests

  

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• Added Multimean and tests

  

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• Testing for get_pior_params

  

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• Changed the GP class

  

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• Improved library imports

  

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• Primary tests for GPresult class

  

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• Added docstrings

  

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• Plot function changed, tests added

  

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• Added testing skips

  

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• Jax import changed

  

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• added kernel and warnings

  

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• Adding max samples option

  

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• Added log parameters

  

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• Changed Function Names

  

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• Docstring changes

  

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• Changelog Changed

  

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• Improved get_mean docs

  

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• Docstrings Updated

  

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• Small doc change

  

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• Fixed usage of dict, added functions to __all__

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• Added num_live_points as parameter

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• Fixed typo in changelog

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• Added installation instructions for GP Modeling

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• Merge branch 'features/GPtool' into GPTool_fixes

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