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Fixes for GP Modeling code #1

Merged
merged 104 commits into from
Sep 29, 2023
Merged

Fixes for GP Modeling code #1

merged 104 commits into from
Sep 29, 2023

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dhuppenkothen
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I've rebased to current main in stingray, and implemented some minor fixes to the code and the docs.

I think the reason this can't be automatically merged is the rebase.

matteobachetti and others added 30 commits September 2, 2023 01:20
@matteobachetti
Update tstart and tseg when truncating the lc
a6ab26d
@matteobachetti
Add changelog
7f9ac55
@matteobachetti
Setup tests to verify correct update of meancounts and many other att…
c3790bc 
…ributes
@mgullik
Merge pull request StingraySoftware#753 from StingraySoftware/fix_tru…
5b338dc 
…ncate

Update tstart and tseg when using Lightcurve.truncate()
@pupperemeritus
Reduced memory usage of EventList.from_lc()
6e5bcd6
@pupperemeritus
added changelog
a656604
@matteobachetti
Merge pull request StingraySoftware#756 from pupperemeritus/EventList…
c6e71d5 
…MemoryOptimization

Reduced memory usage of EventList.from_lc()
@matteobachetti
Speedup event creation a lot in from_lc
965eedd
@matteobachetti
Add changelog
f17f59e
@matteobachetti
Fix non-integer counts
2286103
@matteobachetti
Suppress warning about figurecanvasagg
b0c30f5
@mgullik
Merge pull request StingraySoftware#757 from StingraySoftware/speedup…
c89490b 
…_to_lc_further

Speedup from_lc further
@matteobachetti
Eliminate the legacy option from crossspectrum, and the tests
f8a4160
@matteobachetti
Eliminate the legacy option from powerspectrum, and the tests
6d2d88b
@matteobachetti
Eliminate large memory stuff
0274dc2
@matteobachetti
Add changelog
025c6c1
@matteobachetti
Cleanup
dd18aa0
@matteobachetti
Save sub CS in fourier.py
33105d4
@matteobachetti
Allow to save all sub spectra
aae9e99
@matteobachetti
Allow the save_all option
16c2920
@matteobachetti
Fix docstrings [docs only]
723554b
@matteobachetti
Uniform names for output
ca7d7db
@matteobachetti
Allow the save_all option
2ede742
@matteobachetti
Suppress this specific test until better test in notebook
7309b90
@matteobachetti
All no-good data options were already accounted for
5f876b3
@matteobachetti
Reinstate the different statistics test in crossspectrum
9b87bca
@matteobachetti
Fix behavior when only one input data set is empty
813e957
@matteobachetti
Test on Py3.11 as well
ba235bf
@matteobachetti
Mark change as breaking
524d846
@matteobachetti
Update notebooks [docs only]
2355c56
matteobachetti and others added 29 commits September 28, 2023 10:42
@matteobachetti
Merge pull request StingraySoftware#737 from pupperemeritus/LombScargle
be88264 
Astronomy Using Unevenly Sampled Data : GSoC 2023
@Gaurav17Joshi @dhuppenkothen
Adding_gp_feature
fa329cb
@Gaurav17Joshi @dhuppenkothen
Added skew means
647c72e
@Gaurav17Joshi @dhuppenkothen
Added fred model
0e091ae
@Gaurav17Joshi @dhuppenkothen
Combined GP, GPR class
dbaee73
@Gaurav17Joshi @dhuppenkothen
Added kernel, mean tests
ada63a0
@Gaurav17Joshi @dhuppenkothen
Added Multimean and tests
c1a08a3
@Gaurav17Joshi @dhuppenkothen
Testing for get_pior_params
827cdf7
@Gaurav17Joshi @dhuppenkothen
Changed the GP class
8fa0059
@Gaurav17Joshi @dhuppenkothen
Improved library imports
e00d438
@Gaurav17Joshi @dhuppenkothen
Primary tests for GPresult class
b031ed1
@Gaurav17Joshi @dhuppenkothen
Added docstrings
5d95841
@Gaurav17Joshi @dhuppenkothen
Plot function changed, tests added
c013d4a
@Gaurav17Joshi @dhuppenkothen
Added testing skips
3bf2079
@Gaurav17Joshi @dhuppenkothen
Jax import changed
a14ca4a
@Gaurav17Joshi @dhuppenkothen
added kernel and warnings
f3bef3f
@Gaurav17Joshi @dhuppenkothen
Adding max samples option
181e90a
@Gaurav17Joshi @dhuppenkothen
Added log parameters
b374d6b
@Gaurav17Joshi @dhuppenkothen
Changed Function Names
cb0a0f5
@Gaurav17Joshi @dhuppenkothen
Docstring changes
a2c03c0
@Gaurav17Joshi @dhuppenkothen
Changelog Changed
eeb241a
@Gaurav17Joshi @dhuppenkothen
Improved get_mean docs
c73620b
@Gaurav17Joshi @dhuppenkothen
Docstrings Updated
2d0ba46
@Gaurav17Joshi @dhuppenkothen
Small doc change
c3778a3
@dhuppenkothen
Fixed usage of dict, added functions to __all__
d3447f4
@dhuppenkothen
Added num_live_points as parameter
1fc9f84
@dhuppenkothen
Fixed typo in changelog
78e13f4
@dhuppenkothen
Added installation instructions for GP Modeling
f56c276
@dhuppenkothen
Merge branch 'features/GPtool' into GPTool_fixes
bd2fd59
@Gaurav17Joshi Gaurav17Joshi merged commit e9ef4df into Gaurav17Joshi:features/GPtool Sep 29, 2023
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5 participants
@dhuppenkothen @Gaurav17Joshi @matteobachetti @mgullik @pupperemeritus