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Allow capitalizing CDS sequences and lowercasing introns in sequence feature panel #4354

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merged 10 commits into from
Apr 23, 2024

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This adds an option to the "sequence feature details" that makes it so that the CDS sequences are upper cased and everything else is lower cased. It enables this by default (the previous default was the capitalization from the reference genome which is generally upper case or sometimes lower case if soft masking). It also re-works the UI and code to try to help control the code complexity and ui of all the options

Fixes #3872

@cmdcolin cmdcolin force-pushed the advanced branch 4 times, most recently from 330454c to da41276 Compare April 23, 2024 15:38
@cmdcolin cmdcolin added the enhancement New feature or request label Apr 23, 2024
@cmdcolin cmdcolin merged commit 60afc2b into main Apr 23, 2024
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@cmdcolin cmdcolin deleted the advanced branch April 23, 2024 15:55
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Update display of sequences to distinguish exons from introns
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