Merge pull request #1565 from GMOD/tracktype_option

Rename jbrowse cli add-track --type to --trackType
GMOD · Dec 17, 2020 · 2de8847 · 2de8847
2 parents 8f968fb + f783144
commit 2de8847
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/products/jbrowse-cli/src/commands/add-track.test.ts b/products/jbrowse-cli/src/commands/add-track.test.ts
@@ -265,7 +265,7 @@ describe('add-track', () => {
       'customTrackId',
       '--description',
       'new description',
-      '--type',
+      '--trackType',
       'CustomTrackType',
       '--category',
       'newcategory',

diff --git a/products/jbrowse-cli/src/commands/add-track.ts b/products/jbrowse-cli/src/commands/add-track.ts
@@ -39,7 +39,7 @@ export default class AddTrack extends JBrowseCommand {
     '$ jbrowse add-track /path/to/my.bam --load copy',
     '$ jbrowse add-track /path/to/my.bam --target /path/to/jbrowse2/installation/config.json --load symlink',
     '$ jbrowse add-track https://mywebsite.com/my.bam',
-    `$ jbrowse add-track /path/to/my.bam --type AlignmentsTrack --name 'New Track' --load move`,
+    `$ jbrowse add-track /path/to/my.bam --trackType AlignmentsTrack --name 'New Track' --load move`,
     `$ jbrowse add-track /path/to/my.bam --trackId AlignmentsTrack1 --load inPlace --overwrite`,
     `$ jbrowse add-track /path/to/my.bam --config '{"defaultRendering": "density"}'`,
   ]
@@ -53,7 +53,7 @@ export default class AddTrack extends JBrowseCommand {
   ]
 
   static flags = {
-    type: flags.string({
+    trackType: flags.string({
       char: 't',
       description: `Type of track, by default inferred from track file`,
     }),
@@ -143,7 +143,7 @@ export default class AddTrack extends JBrowseCommand {
     const isDir = (await fsPromises.lstat(output)).isDirectory()
     this.target = isDir ? `${output}/config.json` : output
 
-    let { type, trackId, name, assemblyNames } = runFlags
+    let { trackType, trackId, name, assemblyNames } = runFlags
 
     const configDirectory = path.dirname(this.target)
     if (!argsTrack) {
@@ -208,7 +208,7 @@ export default class AddTrack extends JBrowseCommand {
     }
 
     // set up the track information
-    type = type || this.guessTrackType(adapter.type)
+    const type = trackType || this.guessTrackType(adapter.type)
     trackId = trackId || path.basename(location, path.extname(location))
     name = name || trackId
     assemblyNames = assemblyNames || configContents.assemblies[0].name