Allow codon usage in Mikado prepare and pin marshmallow dependency ve…

…rsions (#433) fix: Allow codon table to be set in mikado prepare #426 fix: Mikado configuration file is invalid #431 fix: Pin marshmallow dependency versions on requirements.txt and environment.yml files
EI-CoreBioinformatics · Jun 9, 2022 · 41e326f · 41e326f
1 parent a62e07f
commit 41e326f
Show file tree

Hide file tree

Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/environment.yml b/environment.yml
@@ -30,8 +30,8 @@ dependencies:
   - wheel
   - pytest>=5.4.1
   - python-rapidjson>=1.0
-  - marshmallow>=3.1.0
-  - marshmallow-dataclass>=8.3.1
+  - marshmallow==3.14.1
+  - marshmallow-dataclass==8.5.3
   - typeguard>=2.9.1
   - conda-forge::toml>=0.10.0
   - bioconda::pyfaidx>=0.5.8
diff --git a/requirements.txt b/requirements.txt
@@ -19,6 +19,6 @@ python-rapidjson>=1.0.0
 toml>=0.10.0
 pyfaidx>=0.5.8
 dataclasses; python_version < '3.7'
-marshmallow
-marshmallow-dataclass
+marshmallow==3.14.1
+marshmallow-dataclass==8.5.3
 typeguard  # Necessary for mashmallow apparently