Disease infrastructure (#35843)

* affected_bodyparts
* expose_to_disease()
* foodborne diseases

data/json/disease.json

@@ -0,0 +1,12 @@
+[
+  {
+    "type": "disease_type",
+    "id": "bad_food",
+    "min_duration": "6 m",
+    "max_duration": "1 h",
+    "min_intensity": 1,
+    "max_intensity": 1,
+    "health_threshold": 100,
+    "symptoms": "foodpoison"
+  }
+]

data/json/items/comestibles/dairy.json

@@ -6,7 +6,7 @@
     "copy-from": "milk",
     "spoils_in": "12 hours",
     "price": 19,
-    "contamination": 5,
+    "contamination": [ { "disease": "bad_food", "probability": 5 } ],
     "description": "This is raw, unhomogenized and unpasteurized milk from a cow.  It couldn't be any fresher unless you drank it straight from the cow, which might upset it.  Depending on your dietary sensibilities, you might want to pasteurize or even boil this before drinking."
   },
   {

doc/JSON_INFO.md

@@ -19,6 +19,7 @@ Use the `Home` key to return to the top.
   * [`data/json/` JSONs](#datajson-jsons)
     + [Bionics](#bionics)
     + [Dreams](#dreams)
+    + [Disease](#disease_type)
     + [Item Groups](#item-groups)
     + [Item Category](#item-category)
     + [Materials](#materials)
@@ -188,6 +189,7 @@ Here's a quick summary of what each of the JSON files contain, broken down by fo
 | default_blacklist.json      | a standard blacklist of joke monsters
 | doll_speech.json            | talk doll speech messages
 | dreams.json                 | dream text and linked mutation categories
+| disease.json                | disease definitions
 | effects.json                | common effects and their effects
 | emit.json                   | smoke and gas emissions
 | flags.json                  | common flags and their descriptions
@@ -457,6 +459,34 @@ When adding a new bionic, if it's not included with another one, you must also a
 }
 ```
 
+### Disease
+
+| Identifier         | Description
+|---                 |---
+| id                 | Unique ID. Must be one continuous word, use underscores if necessary.
+| min_duration       | The minimum duration the disease can last. Uses strings "x m", "x s","x d".
+| max_duration       | The maximum duration the disease can last.
+| min_intensity      | The minimum intensity of the effect applied by the disease
+| max_intensity      | The maximum intensity of the effect.
+| health_threshold   | The amount of health above which one is immune to the disease. Must be between -200 and 200. (optional )
+| symptoms           | The effect applied by the disease.
+| affected_bodyparts | The list of bodyparts on which the effect is applied. (optional, default to num_bp)
+
+
+```json
+  {
+    "type": "disease_type",
+    "id": "bad_food",
+    "min_duration": "6 m",
+    "max_duration": "1 h",
+    "min_intensity": 1,
+    "max_intensity": 1,
+    "affected_bodyparts": [ "TORSO" ],
+    "health_threshold": 100,
+    "symptoms": "foodpoison"
+  }
+```
+
 ### Item Groups
 
 Item groups have been expanded, look at [the detailed docs](ITEM_SPAWN.md) to their new description.
@@ -1603,7 +1633,7 @@ CBMs can be defined like this:
 "freezing_point": 32,       // (Optional) Temperature in F at which item freezes, default is water (32F/0C)
 "cooks_like": "meat_cooked" // (Optional) If the item is used in a recipe, replaces it with its cooks_like
 "parasites": 10,            // (Optional) Probability of becoming parasitised when eating
-"contamination": 5,         // (Optional) Probability to get food poisoning from this comestible. Values must be in the [0, 100] range.
+"contamination": [ { "disease": "bad_food", "probability": 5 } ],         // (Optional) List of diseases carried by this comestible and their associated probability. Values must be in the [0, 100] range.
 ```
 
 ### Containers

src/character.cpp

@@ -16,6 +16,7 @@
 #include "construction.h"
 #include "coordinate_conversions.h"
 #include "debug.h"
+#include "disease.h"
 #include "effect.h"
 #include "event_bus.h"
 #include "field.h"
@@ -1485,6 +1486,25 @@ void Character::add_effect( const efftype_id &eff_id, const time_duration &dur,
     Creature::add_effect( eff_id, dur, bp, permanent, intensity, force, deferred );
 }
 
+void Character::expose_to_disease( const diseasetype_id dis_type )
+{
+    const cata::optional<int> &healt_thresh = dis_type->health_threshold;
+    if( healt_thresh && healt_thresh.value() < get_healthy() ) {
+        return;
+    }
+    const std::set<body_part> &bps = dis_type->affected_bodyparts;
+    if( !bps.empty() ) {
+        for( const body_part &bp : bps ) {
+            add_effect( dis_type->symptoms, rng( dis_type->min_duration, dis_type->max_duration ), bp, false,
+                        rng( dis_type->min_intensity, dis_type->max_intensity ) );
+        }
+    } else {
+        add_effect( dis_type->symptoms, rng( dis_type->min_duration, dis_type->max_duration ), num_bp,
+                    false,
+                    rng( dis_type->min_intensity, dis_type->max_intensity ) );
+    }
+}
+
 void Character::process_turn()
 {
     for( bionic &i : *my_bionics ) {

src/character.h

@@ -565,6 +565,9 @@ class Character : public Creature, public visitable<Character>
         void add_effect( const efftype_id &eff_id, const time_duration &dur, body_part bp = num_bp,
                          bool permanent = false,
                          int intensity = 0, bool force = false, bool deferred = false ) override;
+
+        /**Determine if character is susceptible to dis_type and if so apply the symptoms*/
+        void expose_to_disease( const diseasetype_id dis_type );
         /**
          * Handles end-of-turn processing.
          */

src/consumption.cpp

@@ -13,6 +13,7 @@
 #include "calendar.h"
 #include "cata_utility.h"
 #include "debug.h"
+#include "disease.h"
 #include "game.h"
 #include "itype.h"
 #include "map.h"
@@ -1001,11 +1002,9 @@ bool player::eat( item &food, bool force )
         }
     }
 
-    // Chance to get food poisoning from bacterial contamination
-    if( !will_vomit && !has_bionic( bio_digestion ) ) {
-        const int contamination = food.get_comestible()->contamination;
-        if( rng( 1, 100 ) <= contamination ) {
-            add_effect( effect_foodpoison, rng( 6_minutes, ( nutr + 1 ) * 6_minutes ) );
+    for( const std::pair<diseasetype_id, int> &elem : food.get_comestible()->contamination ) {
+        if( rng( 1, 100 ) <= elem.second ) {
+            expose_to_disease( elem.first );
         }
     }
 

src/disease.cpp

@@ -0,0 +1,61 @@
+#include "disease.h"
+
+#include "assign.h"
+#include "generic_factory.h"
+
+namespace
+{
+generic_factory<disease_type> disease_factory( "disease_type" );
+} // namespace
+
+template<>
+const disease_type &string_id<disease_type>::obj() const
+{
+    return disease_factory.obj( *this );
+}
+
+template<>
+bool string_id<disease_type>::is_valid() const
+{
+    return disease_factory.is_valid( *this );
+}
+
+void disease_type::load_disease_type( const JsonObject &jo, const std::string &src )
+{
+    disease_factory.load( jo, src );
+}
+
+void disease_type::load( const JsonObject &jo, const std::string & )
+{
+    disease_type new_disease;
+
+    assign( jo, "id", id );
+    assign( jo, "min_duration", min_duration );
+    assign( jo, "max_duration", max_duration );
+    assign( jo, "min_intensity", min_intensity );
+    assign( jo, "max_intensity", max_intensity );
+    assign( jo, "health_threshold", health_threshold );
+    assign( jo, "symptoms", symptoms );
+
+    JsonArray jsr = jo.get_array( "affected_bodyparts" );
+    while( jsr.has_more() ) {
+        new_disease.affected_bodyparts.emplace( get_body_part_token( jsr.next_string() ) );
+    }
+
+}
+
+const std::vector<disease_type> &disease_type::get_all()
+{
+    return disease_factory.get_all();
+}
+
+void disease_type::check_disease_consistency()
+{
+    for( const disease_type &dis : get_all() ) {
+        const efftype_id &symp = dis.symptoms;
+        if( !symp.is_valid() ) {
+            debugmsg( "disease_type %s has invalid efftype_id %s in symptoms", dis.id.c_str(),  symp.c_str() );
+        }
+    }
+}
+

src/disease.h

@@ -0,0 +1,33 @@
+#pragma once
+#ifndef DISEASE_H
+#define DISEASE_H
+
+#include "bodypart.h"
+#include "effect.h"
+#include "type_id.h"
+#include "json.h"
+
+class disease_type
+{
+    public:
+        static void load_disease_type( const JsonObject &jo, const std::string &src );
+        void load( const JsonObject &jo, const std::string & );
+        static const std::vector<disease_type> &get_all();
+        static void check_disease_consistency();
+        bool was_loaded;
+
+        diseasetype_id id;
+        time_duration min_duration = 1_turns;
+        time_duration max_duration = 1_turns;
+        int min_intensity = 1;
+        int max_intensity = 1;
+        /**Affected body parts*/
+        std::set<body_part> affected_bodyparts;
+        /**If not empty this sets the health threshold above which you're immune to the disease*/
+        cata::optional<int> health_threshold;
+        /**effect applied by this disease*/
+        efftype_id symptoms;
+
+};
+#endif
+

src/init.cpp

@@ -22,6 +22,7 @@
 #include "creature.h"
 #include "debug.h"
 #include "dialogue.h"
+#include "disease.h"
 #include "effect.h"
 #include "emit.h"
 #include "event_statistics.h"
@@ -221,6 +222,7 @@ void DynamicDataLoader::initialize()
     add( "enchantment", &enchantment::load_enchantment );
     add( "hit_range", &Creature::load_hit_range );
     add( "scent_type", &scent_type::load_scent_type );
+    add( "disease_type", &disease_type::load_disease_type );
 
     // json/colors.json would be listed here, but it's loaded before the others (see init_colors())
     // Non Static Function Access
@@ -696,6 +698,7 @@ void DynamicDataLoader::check_consistency( loading_ui &ui )
             { _( "Statistics" ), &event_statistic::check_consistency },
             { _( "Scent types" ), &scent_type::check_scent_consistency },
             { _( "Scores" ), &score::check_consistency },
+            { _( "Disease types" ), &disease_type::check_disease_consistency },
             { _( "Factions" ), &faction_template::check_consistency },
         }
     };

src/item_factory.cpp

@@ -514,6 +514,14 @@ void Item_factory::finalize_post( itype &obj )
         }
     }
 
+    if( obj.comestible ) {
+        for( const std::pair<diseasetype_id, int> elem : obj.comestible->contamination ) {
+            const diseasetype_id dtype = elem.first;
+            if( !dtype.is_valid() ) {
+                debugmsg( "contamination in %s contains invalid diseasetype_id %s.", obj.id, dtype.c_str() );
+            }
+        }
+    }
     for( std::string &line : obj.ascii_picture ) {
         if( utf8_width( remove_color_tags( line ) ) > ascii_art_width ) {
             line = trim_by_length( line, ascii_art_width );
@@ -1834,12 +1842,16 @@ void Item_factory::load( islot_comestible &slot, const JsonObject &jo, const std
     assign( jo, "fatigue_mod", slot.fatigue_mod, strict );
     assign( jo, "healthy", slot.healthy, strict );
     assign( jo, "parasites", slot.parasites, strict, 0 );
-    assign( jo, "contamination", slot.contamination, strict, 0, 100 );
     assign( jo, "radiation", slot.radiation, strict );
     assign( jo, "freezing_point", slot.freeze_point, strict );
     assign( jo, "spoils_in", slot.spoils, strict, 1_hours );
     assign( jo, "cooks_like", slot.cooks_like, strict );
     assign( jo, "smoking_result", slot.smoking_result, strict );
+
+    for( const JsonObject &jsobj : jo.get_array( "contamination" ) ) {
+        slot.contamination.emplace( diseasetype_id( jsobj.get_string( "disease" ) ),
+                                    jsobj.get_int( "probability" ) );
+    }
 
     if( jo.has_member( "primary_material" ) ) {
         std::string mat = jo.get_string( "primary_material" );

src/itype.h

@@ -155,15 +155,15 @@ struct islot_comestible {
         /** chance (odds) of becoming parasitised when eating (zero if never occurs) */
         int parasites = 0;
 
-        /** probability [0, 100] to get food poisoning from this comestible */
-        int contamination = 0;
-
         /**Amount of radiation you get from this comestible*/
         int radiation = 0;
 
         /** freezing point in degrees Fahrenheit, below this temperature item can freeze */
         int freeze_point = temperatures::freezing;
 
+        /**List of diseases carried by this comestible and their associated probability*/
+        std::map<diseasetype_id, int> contamination;
+
         //** specific heats in J/(g K) and latent heat in J/g */
         float specific_heat_liquid = 4.186;
         float specific_heat_solid = 2.108;

src/type_id.h

@@ -31,6 +31,9 @@ using efftype_id = string_id<effect_type>;
 class scent_type;
 using scenttype_id = string_id<scent_type>;
 
+class disease_type;
+using diseasetype_id = string_id<disease_type>;
+
 class emit;
 using emit_id = string_id<emit>;