Bump the pip group across 7 directories with 8 updates #480

dependabot · 2024-05-06T15:55:07Z

Bumps the pip group with 5 updates in the /src/modules/api/pipeline-task directory:

Package	From	To
flask	`1.1.2`	`2.2.5`
gunicorn	`20.1.0`	`22.0.0`
sentry-sdk	`1.7.2`	`1.14.0`
jinja2	`3.0.3`	`3.1.4`
werkzeug	`1.0.0`	`3.0.3`

Bumps the pip group with 4 updates in the /src/modules/db_operations directory: flask, sentry-sdk, jinja2 and werkzeug.
Bumps the pip group with 2 updates in the /src/modules/indel_primer directory: sentry-sdk and jinja2.
Bumps the pip group with 3 updates in the /src/modules/maintenance directory: flask, jinja2 and werkzeug.
Bumps the pip group with 6 updates in the /src/modules/site directory:

Package	From	To
flask	`1.1.2`	`2.2.5`
sentry-sdk	`1.7.2`	`1.14.0`
jinja2	`3.0.3`	`3.1.4`
werkzeug	`1.0.0`	`3.0.3`
httplib2	`0.18.0`	`0.19.0`
pyarrow	`0.17.1`	`14.0.1`

Bumps the pip group with 6 updates in the /src/modules/site-v2 directory:

Package	From	To
flask	`1.1.2`	`2.2.5`
sentry-sdk	`1.7.2`	`1.14.0`
jinja2	`3.0.3`	`3.1.4`
werkzeug	`1.0.0`	`3.0.3`
httplib2	`0.18.0`	`0.19.0`
pyarrow	`0.17.1`	`14.0.1`

Bumps the pip group with 5 updates in the /src/pkg/caendr directory:

Package	From	To
flask	`1.1.2`	`2.2.5`
sentry-sdk	`1.7.2`	`1.14.0`
jinja2	`3.0.3`	`3.1.4`
werkzeug	`1.0.0`	`3.0.3`
numpy	`1.19.5`	`1.22.0`

Updates flask from 1.1.2 to 2.2.5

Release notes

Sourced from flask's releases.

2.2.5

This is a security fix release for the 2.2.x release branch. Note that 2.3.x is the currently supported release branch; please upgrade to the latest version if possible.

Security advisory: GHSA-m2qf-hxjv-5gpq, CVE-2023-30861

Changes: https://flask.palletsprojects.com/en/2.2.x/changes/#version-2-2-5

Milestone: https://github.com/pallets/flask/milestone/30?closed=1

2.2.4

This is a fix release for the 2.2.x release branch.

Changes: https://flask.palletsprojects.com/en/2.2.x/changes/#version-2-2-4

Milestone: https://github.com/pallets/flask/milestone/27?closed=1

2.2.3

This is a fix release for the 2.2.x release branch.

Changes: https://flask.palletsprojects.com/en/2.2.x/changes/#version-2-2-3

Milestone: https://github.com/pallets/flask/milestone/26?closed=1

2.2.2

This is a fix release for the 2.2.0 feature release.

Changes: https://flask.palletsprojects.com/en/2.2.x/changes/#version-2-2-2

Milestone: https://github.com/pallets/flask/milestone/25?closed=1

2.2.1

This is a fix release for the 2.2.0 feature release.

Changes: https://flask.palletsprojects.com/en/2.2.x/changes/#version-2-2-1

Milestone: https://github.com/pallets/flask/milestone/23?closed=1

2.2.0

This is a feature release, which includes new features and removes previously deprecated code. The 2.2.x branch is now the supported bug fix branch, the 2.1.x branch will become a tag marking the end of support for that branch. We encourage everyone to upgrade, and to use a tool such as pip-tools to pin all dependencies and control upgrades.

Changes: https://flask.palletsprojects.com/en/2.2.x/changes/#version-2-2-0

Milestone: https://github.com/pallets/flask/milestone/19?closed=1

2.1.3

Changes: https://flask.palletsprojects.com/en/2.1.x/changes/#version-2-1-3

Milestone: https://github.com/pallets/flask/milestone/22?closed=1

2.1.2

This is a fix release for the 2.1.0 feature release.

Changes: https://flask.palletsprojects.com/en/2.1.x/changes/#version-2-1-2

Milestone: https://github.com/pallets/flask/milestone/21?closed=1

2.1.1

This is a fix release for the 2.1.0 feature release.

... (truncated)

Changelog

Sourced from flask's changelog.

Version 2.2.5

Released 2023-05-02

Update for compatibility with Werkzeug 2.3.3.

Set Vary: Cookie header when the session is accessed, modified, or refreshed.

Version 2.2.4

Released 2023-04-25

Update for compatibility with Werkzeug 2.3.

Version 2.2.3

Released 2023-02-15

Autoescape is enabled by default for .svg template files. :issue:4831

Fix the type of template_folder to accept pathlib.Path. :issue:4892

Add --debug option to the flask run command. :issue:4777

Version 2.2.2

Released 2022-08-08

Update Werkzeug dependency to >= 2.2.2. This includes fixes related to the new faster router, header parsing, and the development server. :pr:4754

Fix the default value for app.env to be "production". This attribute remains deprecated. :issue:4740

Version 2.2.1

Released 2022-08-03

Setting or accessing json_encoder or json_decoder raises a deprecation warning. :issue:4732

Version 2.2.0

... (truncated)

Commits

47af817 release version 2.2.5
afd63b1 Merge pull request #5109 from pallets/backport-vary-cookie
8646edc set Vary: Cookie header consistently for session
a6367da Merge pull request #5108 from pallets/werkzeug-compat
3fbfbad werkzeug 2.3.3 compatibility
726d3f4 start version 2.2.5
ddc7acc Merge pull request #5081 from pallets/release-2.2.4
74e0329 release version 2.2.4
2d46068 update dev env
64bc458 update dev dependencies
Additional commits viewable in compare view

Updates gunicorn from 20.1.0 to 22.0.0

Release notes

Sourced from gunicorn's releases.

Gunicorn 22.0 has been released

Gunicorn 22.0.0 has been released. This version fix the numerous security vulnerabilities. You're invited to upgrade asap your own installation.

Changes:

22.0.0 - 2024-04-17
===================

use utime to notify workers liveness
migrate setup to pyproject.toml
fix numerous security vulnerabilities in HTTP parser (closing some request smuggling vectors)
parsing additional requests is no longer attempted past unsupported request framing
on HTTP versions < 1.1 support for chunked transfer is refused (only used in exploits)
requests conflicting configured or passed SCRIPT_NAME now produce a verbose error
Trailer fields are no longer inspected for headers indicating secure scheme
support Python 3.12

** Breaking changes **

minimum version is Python 3.7
the limitations on valid characters in the HTTP method have been bounded to Internet Standards
requests specifying unsupported transfer coding (order) are refused by default (rare)
HTTP methods are no longer casefolded by default (IANA method registry contains none affected)
HTTP methods containing the number sign (#) are no longer accepted by default (rare)
HTTP versions < 1.0 or >= 2.0 are no longer accepted by default (rare, only HTTP/1.1 is supported)
HTTP versions consisting of multiple digits or containing a prefix/suffix are no longer accepted
HTTP header field names Gunicorn cannot safely map to variables are silently dropped, as in other software
HTTP headers with empty field name are refused by default (no legitimate use cases, used in exploits)
requests with both Transfer-Encoding and Content-Length are refused by default (such a message might indicate an attempt to perform request smuggling)
empty transfer codings are no longer permitted (reportedly seen with really old & broken proxies)

** SECURITY **

fix CVE-2024-1135

Documentation is available there: https://docs.gunicorn.org/en/stable/news.html
Packages: https://pypi.org/project/gunicorn/

Gunicorn 21.2.0 has been released

Gunicorn 21.2.0 has been released. This version fix the issue introduced in the threaded worker.

Changes:

21.2.0 - 2023-07-19
===================
fix thread worker: revert change considering connection as idle .
</tr></table>

... (truncated)

Commits

f63d59e bump to 22.0
4ac81e0 Merge pull request #3175 from e-kwsm/typo
401cecf Merge pull request #3179 from dhdaines/exclude-eventlet-0360
0243ec3 fix(deps): exclude eventlet 0.36.0
628a0bc chore: fix typos
88fc4a4 Merge pull request #3131 from pajod/patch-py12-rebased
deae2fc CI: back off the agressive timeout
f470382 docs: promise 3.12 compat
5e30bfa add changelog to project.urls (updated for PEP621)
481c3f9 remove setup.cfg - overridden by pyproject.toml
Additional commits viewable in compare view

Updates sentry-sdk from 1.7.2 to 1.14.0

Release notes

Sourced from sentry-sdk's releases.

1.14.0

Various fixes & improvements
Add before_send_transaction (#1840) by @antonpirker

Adds a hook (similar to before_send) that is called for all transaction events (performance releated data).

Usage:
  import sentry_sdk
def strip_sensitive_data(event, hint):
# modify event here (or return None if you want to drop the event entirely)
return event
sentry_sdk.init(
# ...
before_send_transaction=strip_sensitive_data,
)
See also: https://docs.sentry.io/platforms/python/configuration/filtering/#using-platformidentifier-namebefore-send-transaction-
Django: Always remove values of Django session related cookies. (#1842) by @antonpirker

Profiling: Enable profiling for ASGI frameworks (#1824) by @Zylphrex

Profiling: Better gevent support (#1822) by @Zylphrex

Profiling: Add profile context to transaction (#1860) by @Zylphrex

Profiling: Use co_qualname in python 3.11 (#1831) by @Zylphrex

OpenTelemetry: fix Use dict for sentry-trace context instead of tuple (#1847) by @AbhiPrasad

OpenTelemetry: fix extra dependency (#1825) by @bernardotorres

OpenTelemetry: fix NoOpSpan updates scope (#1834) by @Zylphrex

OpenTelemetry: Make sure to noop when there is no DSN (#1852) by @antonpirker

FastAPI: Fix middleware being patched multiple times (#1841) by @JohnnyDeuss

Starlette: Avoid import of pkg_resource with Starlette integration (#1836) by @mgu

Removed code coverage target (#1862) by @antonpirker
1.13.0

Various fixes & improvements
Add Starlite integration (#1748) by @gazorby

Adding support for the Starlite framework. Unhandled errors are captured. Performance spans for Starlite middleware are also captured. Thanks @gazorby for the great work!

Usage:
from starlite import Starlite, get
import sentry_sdk

... (truncated)

Changelog

Sourced from sentry-sdk's changelog.

1.14.0

Various fixes & improvements
Add before_send_transaction (#1840) by @antonpirker

Adds a hook (similar to before_send) that is called for all transaction events (performance releated data).

Usage:
  import sentry_sdk
def strip_sensitive_data(event, hint):
# modify event here (or return None if you want to drop the event entirely)
return event
sentry_sdk.init(
# ...
before_send_transaction=strip_sensitive_data,
)
See also: https://docs.sentry.io/platforms/python/configuration/filtering/#using-platformidentifier-namebefore-send-transaction-
Django: Always remove values of Django session related cookies. (#1842) by @antonpirker

Profiling: Enable profiling for ASGI frameworks (#1824) by @Zylphrex

Profiling: Better gevent support (#1822) by @Zylphrex

Profiling: Add profile context to transaction (#1860) by @Zylphrex

Profiling: Use co_qualname in python 3.11 (#1831) by @Zylphrex

OpenTelemetry: fix Use dict for sentry-trace context instead of tuple (#1847) by @AbhiPrasad

OpenTelemetry: fix extra dependency (#1825) by @bernardotorres

OpenTelemetry: fix NoOpSpan updates scope (#1834) by @Zylphrex

OpenTelemetry: Make sure to noop when there is no DSN (#1852) by @antonpirker

FastAPI: Fix middleware being patched multiple times (#1841) by @JohnnyDeuss

Starlette: Avoid import of pkg_resource with Starlette integration (#1836) by @mgu

Removed code coverage target (#1862) by @antonpirker
1.13.0

Various fixes & improvements
Add Starlite integration (#1748) by @gazorby

Adding support for the Starlite framework. Unhandled errors are captured. Performance spans for Starlite middleware are also captured. Thanks @gazorby for the great work!

Usage:
from starlite import Starlite, get

... (truncated)

Commits

8c4a19a Updated changelog
f095df7 release: 1.14.0
d27808f Removed code coverage target (#1862)
cd2f51b feat(profiling): Add profile context to transaction (#1860)
d515233 Always remove Django session related cookies. (#1842)
032ea57 Make sure to noop when there is no DSN (#1852)
086e385 feat(profiling): Use co_qualname in python 3.11 (#1831)
0714d9f Fix middleware being patched multiple times when using FastAPI (#1841)
1ac27c8 fix(opentelemetry): Use dict for sentry-trace context instead of tuple (#1847)
504188c fix extra dependency (#1825)
Additional commits viewable in compare view

Updates jinja2 from 3.0.3 to 3.1.4

Release notes

Sourced from jinja2's releases.

3.1.4

This is the Jinja 3.1.4 security release, which fixes security issues and bugs but does not otherwise change behavior and should not result in breaking changes.

PyPI: https://pypi.org/project/Jinja2/3.1.4/ Changes: https://jinja.palletsprojects.com/en/3.1.x/changes/#version-3-1-4

The xmlattr filter does not allow keys with / solidus, > greater-than sign, or = equals sign, in addition to disallowing spaces. Regardless of any validation done by Jinja, user input should never be used as keys to this filter, or must be separately validated first. GHSA-h75v-3vvj-5mfj

3.1.3

This is a fix release for the 3.1.x feature branch.

Fix for GHSA-h5c8-rqwp-cp95. You are affected if you are using xmlattr and passing user input as attribute keys.

Changes: https://jinja.palletsprojects.com/en/3.1.x/changes/#version-3-1-3

Milestone: https://github.com/pallets/jinja/milestone/15?closed=1

3.1.2

This is a fix release for the 3.1.0 feature release.

Changes: https://jinja.palletsprojects.com/en/3.1.x/changes/#version-3-1-2

Milestone: https://github.com/pallets/jinja/milestone/13?closed=1

3.1.1

Changes: https://jinja.palletsprojects.com/en/3.1.x/changes/#version-3-1-1

Milestone: https://github.com/pallets/jinja/milestone/12?closed=1

3.1.0

This is a feature release, which includes new features and removes previously deprecated features. The 3.1.x branch is now the supported bugfix branch, the 3.0.x branch has become a tag marking the end of support for that branch. We encourage everyone to upgrade, and to use a tool such as pip-tools to pin all dependencies and control upgrades. We also encourage upgrading to MarkupSafe 2.1.1, the latest version at this time.

Changes: https://jinja.palletsprojects.com/en/3.1.x/changes/#version-3-1-0

Milestone: https://github.com/pallets/jinja/milestone/8?closed=1

MarkupSafe changes: https://markupsafe.palletsprojects.com/en/2.1.x/changes/#version-2-1-1

Changelog

Sourced from jinja2's changelog.

Version 3.1.4

Released 2024-05-05

The xmlattr filter does not allow keys with / solidus, > greater-than sign, or = equals sign, in addition to disallowing spaces. Regardless of any validation done by Jinja, user input should never be used as keys to this filter, or must be separately validated first. :ghsa:h75v-3vvj-5mfj

Version 3.1.3

Released 2024-01-10

Fix compiler error when checking if required blocks in parent templates are empty. :pr:1858

xmlattr filter does not allow keys with spaces. :ghsa:h5c8-rqwp-cp95

Make error messages stemming from invalid nesting of {% trans %} blocks more helpful. :pr:1918

Version 3.1.2

Released 2022-04-28

Add parameters to Environment.overlay to match __init__. :issue:1645

Handle race condition in FileSystemBytecodeCache. :issue:1654

Version 3.1.1

Released 2022-03-25

The template filename on Windows uses the primary path separator. :issue:1637

Version 3.1.0

Released 2022-03-24

Drop support for Python 3.6. :pr:1534

Remove previously deprecated code. :pr:1544

... (truncated)

Commits

dd4a8b5 release version 3.1.4
0668239 Merge pull request from GHSA-h75v-3vvj-5mfj
d655030 disallow invalid characters in keys to xmlattr filter
a7863ba add ghsa links
b5c98e7 start version 3.1.4
da3a9f0 update project files (#1968)
0ee5eb4 satisfy formatter, linter, and strict mypy
20477c6 update project files (#5457)
e491223 update pyyaml dev dependency
36f9885 fix pr link
Additional commits viewable in compare view

Updates werkzeug from 1.0.0 to 3.0.3

Release notes

Sourced from werkzeug's releases.

3.0.3

This is the Werkzeug 3.0.3 security release, which fixes security issues and bugs but does not otherwise change behavior and should not result in breaking changes.

PyPI: https://pypi.org/project/Werkzeug/3.0.3/ Changes: https://werkzeug.palletsprojects.com/en/3.0.x/changes/#version-3-0-3 Milestone: https://github.com/pallets/werkzeug/milestone/35?closed=1

Only allow localhost, .localhost, 127.0.0.1, or the specified hostname when running the dev server, to make debugger requests. Additional hosts can be added by using the debugger middleware directly. The debugger UI makes requests using the full URL rather than only the path. GHSA-2g68-c3qc-8985

Make reloader more robust when "" is in sys.path. #2823

Better TLS cert format with adhoc dev certs. #2891

Inform Python < 3.12 how to handle itms-services URIs correctly, rather than using an overly-broad workaround in Werkzeug that caused some redirect URIs to be passed on without encoding. #2828

Type annotation for Rule.endpoint and other uses of endpoint is Any. #2836

3.0.2

This is a fix release for the 3.0.x feature branch.

Changes: https://werkzeug.palletsprojects.com/en/3.0.x/changes/#version-3-0-2

3.0.1

This is a security release for the 3.0.x feature branch.

Changes: https://werkzeug.palletsprojects.com/en/3.0.x/changes/#version-3-0-1

3.0.0

This is a feature release, which includes new features, removes previously deprecated code, and adds new deprecations. The 3.0.x branch is now the supported fix branch, the 2.3.x branch will become a tag marking the end of support for that branch. We encourage everyone to upgrade, and to use a tool such as pip-tools to pin all dependencies and control upgrades. Test with warnings treated as errors to be able to adapt to deprecation warnings early.

Changes: https://werkzeug.palletsprojects.com/en/3.0.x/changes/#version-3-0-0

Milestone: https://github.com/pallets/werkzeug/milestone/21?closed=1

2.3.8

This is a security release for the 2.3.x feature branch.

Changes: https://werkzeug.palletsprojects.com/en/2.3.x/changes/#version-2-3-8

2.3.7

This is a fix release for the 2.3.x feature branch.

Changes: https://werkzeug.palletsprojects.com/en/2.3.x/changes/#version-2-3-7

Milestone: https://github.com/pallets/werkzeug/milestone/33?closed=1

2.3.6

This is a fix release for the 2.3.x feature branch.

Changes: https://werkzeug.palletsprojects.com/en/2.3.x/changes/#version-2-3-6

Milestone: https://github.com/pallets/werkzeug/milestone/32?closed=1

2.3.5

This is a fix release for the 2.3.x feature branch.

... (truncated)

Changelog

Sourced from werkzeug's changelog.

Version 3.0.3

Released 2024-05-05

Only allow localhost, .localhost, 127.0.0.1, or the specified hostname when running the dev server, to make debugger requests. Additional hosts can be added by using the debugger middleware directly. The debugger UI makes requests using the full URL rather than only the path. :ghsa:2g68-c3qc-8985

Make reloader more robust when "" is in sys.path. :pr:2823

Better TLS cert format with adhoc dev certs. :pr:2891

Inform Python < 3.12 how to handle itms-services URIs correctly, rather than using an overly-broad workaround in Werkzeug that caused some redirect URIs to be passed on without encoding. :issue:2828

Type annotation for Rule.endpoint and other uses of endpoint is Any. :issue:2836

Make reloader more robust when "" is in sys.path. :pr:2823

Version 3.0.2

Released 2024-04-01

Ensure setting merge_slashes to False results in NotFound for repeated-slash requests against single slash routes. :issue:2834

Fix handling of TypeError in TypeConversionDict.get() to match ValueError. :issue:2843

Fix response_wrapper type check in test client. :issue:2831

Make the return type of MultiPartParser.parse more precise. :issue:2840

Raise an error if converter arguments cannot be parsed. :issue:2822

Version 3.0.1

Released 2023-10-24

Fix slow multipart parsing for large parts potentially enabling DoS attacks.

Version 3.0.0

Released 2023-09-30

Remove previously deprecated code. :pr:2768

... (truncated)

Commits

f9995e9 release version 3.0.3
3386395 Merge pull request from GHSA-2g68-c3qc-8985
890b6b6 only require trusted host for evalex
71b69df restrict debugger trusted hosts
d2d3869 endpoint type is Any (#2895)
7080b55 endpoint type is Any
7555eff remove iri_to_uri redirect workaround (#2894)
97fb2f7 remove _invalid_iri_to_uri workaround
249527f make cn field a valid single hostname, and use wildcard in SANs field. (#2892)
793be47 update adhoc tls dev cert format
Additional commits viewable in compare view

Updates flask from 1.1.2 to 2.2.5

Release notes

Sourced from flask's releases.

2.2.5

This is a security fix release for the 2.2.x release branch. Note that 2.3.x is the currently supported release branch; please upgrade to the latest version if possible.

Security advisory: GHSA-m2qf-hxjv-5gpq, CVE-2023-30861

Changes: https://flask.palletsprojects.com/en/2.2.x/changes/#version-2-2-5

Milestone: https://github.com/pallets/flask/milestone/30?closed=1

2.2.4

This is a fix release for the 2.2.x release branch.

Changes: https://flask.palletsprojects.com/en/2.2.x/changes/#version-2-2-4

Milestone: https://github.com/pallets/flask/milestone/27?closed=1

2.2.3

This is a fix release for the 2.2.x release branch.

Changes: https://flask.palletsprojects.com/en/2.2.x/changes/#version-2-2-3

Milestone: https://github.com/pallets/flask/milestone/26?closed=1

2.2.2

This is a fix release for the 2.2.0 feature release.

Changes: https://flask.palletsprojects.com/en/2.2.x/changes/#version-2-2-2

Milestone: https://github.com/pallets/flask/milestone/25?closed=1

2.2.1

This is a fix release for the 2.2.0 feature release.

Changes: https://flask.palletsprojects.com/en/2.2.x/changes/#version-2-2-1

Milestone: https://github.com/pallets/flask/milestone/23?closed=1

2.2.0

This is a feature release, which includes new features and removes previously deprecated code. The 2.2.x branch is now the supported bug fix branch, the 2.1.x branch will become a tag marking the end of support for that branch. We encourage everyone to upgrade, and to use a tool such as pip-tools to pin all dependencies and control upgrades.

Changes: https://flask.palletsprojects.com/en/2.2.x/changes/#version-2-2-0

Milestone: https://github.com/pallets/flask/milestone/19?closed=1

2.1.3

Changes: https://flask.palletsprojects.com/en/2.1.x/changes/#version-2-1-3

Milestone: https://github.com/pallets/flask/milestone/22?closed=1

2.1.2

This is a fix release for the 2.1.0 feature release.

Changes: https://flask.palletsprojects.com/en/2.1.x/changes/#version-2-1-2

Milestone: https://github.com/pallets/flask/milestone/21?closed=1

2.1.1

This is a fix release for the 2.1.0 feature release.

... (truncated)

Changelog

Sourced from flask's changelog.

Version 2.2.5

Released 2023-05-02

Update for compatibility with Werkzeug 2.3.3.

Set Vary: Cookie header when the session is accessed, modified, or refreshed.

Version 2.2.4

Released 2023-04-25

Update for compatibility with Werkzeug 2.3.

Version 2.2.3

Released 2023-02-15

Autoescape is enabled by default for .svg template files. :issue:4831

Fix the type of template_folder to accept pathlib.Path. :issue:4892

Add --debug option to the flask run command. :issue:4777

Version 2.2.2

Released 2022-08-08

Update Werkzeug dependency to >= 2.2.2. This includes fixes related to the new faster router, header parsing, and the development server. :pr:4754

Fix the default value for app.env to be "production". This attribute remains deprecated. :issue:4740

Version 2.2.1

Released 2022-08-03

Setting or accessing json_encoder or json_decoder raises a deprecation warning. :issue:4732

Version 2.2.0

... (truncated)

Commits

47af817 release version 2.2.5
afd63b1 Merge pull request #5109 from pallets/backport-vary-cookie
8646edc set Vary: Cookie header consistently for session
a6367da Merge pull request #5108 from pallets/werkzeug-compat
3fbfbad werkzeug 2.3.3 compatibility
726d3f4 start version 2.2.5
ddc7acc Merge pull request #5081 from pallets/release-2.2.4
74e0329 release version 2.2.4
2d46068 update dev env
64bc458 update dev dependencies
Additional commits viewable in compare view

Updates sentry-sdk from 1.7.2 to 1.14.0

Release notes

Sourced from sentry-sdk's releases.

1.14.0

Various fixes & improvements
Add before_send_transaction (#1840) by @antonpirker

Adds a hook (similar to before_send) that is called for all transaction events (performance releated data).

Usage:
  import sentry_sdk
def strip_sensitive_data(event, hint):
# modify event here (or return None if you want to drop the event entirely)
return event
sentry_sdk.init(
# ...
before_send_transaction=strip_sensitive_data,
)
See also: https://docs.sentry.io/platforms/python/configuration/filtering/#using-platformidentifier-namebefore-send-transaction-
Django: Always remove values of Django session related cookies. (#1842) by @antonpirker

Profiling: Enable profiling for ASGI frameworks (#1824) by @Zylphrex

Profiling: Better gevent support (#1822) by @Zylphrex

Profiling: Add profile context to transaction (#1860) by @Zylphrex

Profiling: Use co_qualname in python 3.11 (#1831) by @Zylphrex

OpenTelemetry: fix Use dict for sentry-trace context instead of tuple (#1847) by @AbhiPrasad

OpenTelemetry: fix extra dependency (#1825) by @bernardotorres

OpenTelemetry: fix NoOpSpan updates scope (#1834) by @Zylphrex

OpenTelemetry: Make sure to noop when there is no DSN (#1852) by @antonpirker

FastAPI: Fix middleware being patched multiple times (#1841) by @JohnnyDeuss

Starlette: Avoid import of pkg_resource with Starlette integration (#1836) by @mgu

Removed code coverage target (#1862) by @antonpirker
1.13.0

Various fixes & improvements
Add Starlite integration (#1748) by @gazorby

Adding support for the Starlite framework. Unhandled errors are captured. Performance spans for Starlite middleware are also captured. Thanks @gazorby for the great work!

Usage:
from starlite import Starlite, get
import sentry_sdk

... (truncated)

Changelog

Sourced from sentry-sdk's changelog.

1.14.0

Various fixes & improvements
Add before_send_transaction (#1840) by @antonpirker

Adds a hook (similar to before_send) that is called for all transaction events (performance releated data).

Usage:
  import sentry_sdk
def strip_sensitive_data(event, hint):
# modify event here (or return None if you want to drop the event entirely)
return event
sentry_sdk.init(
# ...
before_send_transaction=strip_sensitive_data,
)
See also: https://docs.sentry.io/platforms/python/configuration/filtering/#using-platformidentifier-namebefore-send-transaction-
Django: Always remove values of Django session related cookies. (#1842) by @antonpirker

Profiling: Enable profiling for ASGI frameworks (#1824) by @Zylphrex

Profiling: Better gevent support (#1822) by @Zylphrex

Profiling: Add profile context to transaction (#1860) by @Zylphrex

Profiling: Use co_qualname in python 3.11 (#1831) by @Zylphrex

OpenTelemetry: fix Use dict for sentry-trace context instead of tuple (#1847) by @AbhiPrasad

OpenTelemetry: fix extra dependency (#1825) by @bernardotorres

OpenTelemetry: fix NoOpSpan updates scope (#1834) by @Zylphrex

OpenTelemetry: Make sure to noop when there is no DSN (#1852) by @antonpirker

FastAPI: Fix middleware being patched multiple times (#1841) by @JohnnyDeuss

Starlette: Avoid import of pkg_resource with Starlette integration (#1836) by @mgu

Removed code coverage target (#1862) by @antonpirker
1.13.0

Various fixes & improvements
Add Starlite integration (#1748) by @gazorby

Adding support for the Starlite framework. Unhandled errors are captured. Performance spans for Starlite middleware are also captured. Thanks @gazorby for the great work!

Usage:
from starlite import Starlite, get

... (truncated)

Commits

8c4a19a Updated changelog
f095df7 release: 1.14.0
d27808f Removed code coverage target (#1862)
cd2f51b feat(profiling): Add profile context to transaction (#1860)
d515233 Always remove Django session related cookies. (#1842)
032ea57 Make sure to noop when there is no DSN (#1852)
086e385 feat(profiling): Use co_qualname in python 3.11 (#1831)
0714d9f Fix middleware being patched multiple times when using FastAPI (#1841)
1ac27c8 fix(opentelemetry): Use dict for sentry-trace context instead of tuple (#1847)
504188c fix extra dependency (#1825)
Additional commits viewable in compare view

Updates jinja2 from 3.0.3 to 3.1.4

Release notes

Sourced from jinja2's releases.

3.1.4

This is the Jinja 3.1.4 security release, which fixes security issues and bugs but does not otherwise change behavior and should not result in breaking changes.

PyPI: https://pypi.org/project/Jinja2/3.1.4/ Changes: https://jinja.palletsprojects.com/en/3.1.x/changes/#version-3-1-4

The xmlattr filter does not allow keys with / solidus, > greater-than sign, or = equals sign, in addition to disallowing spaces. Regardless of any validation done by Jinja, user input should never be used as keys to this filter, or must be separately validated first. GHSA-h75v-3vvj-5mfj

3.1.3

This is a fix release for the 3.1.x feature branch.

Fix for GHSA-h5c8-rqwp-cp95. You are affected if you are using xmlattr and passing user input as attribute keys.

Changes: https://jinja.palletsprojects.com/en/3.1.x/changes/#version-3-1-3

Milestone: https://github.com/pallets/jinja/milestone/15?closed=1

3.1.2

This is a fix release for the 3.1.0 feature release.

Changes: https://jinja.palletsprojects.com/en/3.1.x/changes/#version-3-1-2

Milestone: https://github.com/pallets/jinja/milestone/13?closed=1
<...
Description has been truncated

Note
Automatic rebases have been disabled on this pull request as it has been open for over 30 days.

Bumps the pip group with 5 updates in the /src/modules/api/pipeline-task directory: | Package | From | To | | --- | --- | --- | | [flask](https://github.com/pallets/flask) | `1.1.2` | `2.2.5` | | [gunicorn](https://github.com/benoitc/gunicorn) | `20.1.0` | `22.0.0` | | [sentry-sdk](https://github.com/getsentry/sentry-python) | `1.7.2` | `1.14.0` | | [jinja2](https://github.com/pallets/jinja) | `3.0.3` | `3.1.4` | | [werkzeug](https://github.com/pallets/werkzeug) | `1.0.0` | `3.0.3` | Bumps the pip group with 4 updates in the /src/modules/db_operations directory: [flask](https://github.com/pallets/flask), [sentry-sdk](https://github.com/getsentry/sentry-python), [jinja2](https://github.com/pallets/jinja) and [werkzeug](https://github.com/pallets/werkzeug). Bumps the pip group with 2 updates in the /src/modules/indel_primer directory: [sentry-sdk](https://github.com/getsentry/sentry-python) and [jinja2](https://github.com/pallets/jinja). Bumps the pip group with 3 updates in the /src/modules/maintenance directory: [flask](https://github.com/pallets/flask), [jinja2](https://github.com/pallets/jinja) and [werkzeug](https://github.com/pallets/werkzeug). Bumps the pip group with 6 updates in the /src/modules/site directory: | Package | From | To | | --- | --- | --- | | [flask](https://github.com/pallets/flask) | `1.1.2` | `2.2.5` | | [sentry-sdk](https://github.com/getsentry/sentry-python) | `1.7.2` | `1.14.0` | | [jinja2](https://github.com/pallets/jinja) | `3.0.3` | `3.1.4` | | [werkzeug](https://github.com/pallets/werkzeug) | `1.0.0` | `3.0.3` | | [httplib2](https://github.com/httplib2/httplib2) | `0.18.0` | `0.19.0` | | [pyarrow](https://github.com/apache/arrow) | `0.17.1` | `14.0.1` | Bumps the pip group with 6 updates in the /src/modules/site-v2 directory: | Package | From | To | | --- | --- | --- | | [flask](https://github.com/pallets/flask) | `1.1.2` | `2.2.5` | | [sentry-sdk](https://github.com/getsentry/sentry-python) | `1.7.2` | `1.14.0` | | [jinja2](https://github.com/pallets/jinja) | `3.0.3` | `3.1.4` | | [werkzeug](https://github.com/pallets/werkzeug) | `1.0.0` | `3.0.3` | | [httplib2](https://github.com/httplib2/httplib2) | `0.18.0` | `0.19.0` | | [pyarrow](https://github.com/apache/arrow) | `0.17.1` | `14.0.1` | Bumps the pip group with 5 updates in the /src/pkg/caendr directory: | Package | From | To | | --- | --- | --- | | [flask](https://github.com/pallets/flask) | `1.1.2` | `2.2.5` | | [sentry-sdk](https://github.com/getsentry/sentry-python) | `1.7.2` | `1.14.0` | | [jinja2](https://github.com/pallets/jinja) | `3.0.3` | `3.1.4` | | [werkzeug](https://github.com/pallets/werkzeug) | `1.0.0` | `3.0.3` | | [numpy](https://github.com/numpy/numpy) | `1.19.5` | `1.22.0` | Updates `flask` from 1.1.2 to 2.2.5 - [Release notes](https://github.com/pallets/flask/releases) - [Changelog](https://github.com/pallets/flask/blob/main/CHANGES.rst) - [Commits](pallets/flask@1.1.2...2.2.5) Updates `gunicorn` from 20.1.0 to 22.0.0 - [Release notes](https://github.com/benoitc/gunicorn/releases) - [Commits](benoitc/gunicorn@20.1.0...22.0.0) Updates `sentry-sdk` from 1.7.2 to 1.14.0 - [Release notes](https://github.com/getsentry/sentry-python/releases) - [Changelog](https://github.com/getsentry/sentry-python/blob/master/CHANGELOG.md) - [Commits](getsentry/sentry-python@1.7.2...1.14.0) Updates `jinja2` from 3.0.3 to 3.1.4 - [Release notes](https://github.com/pallets/jinja/releases) - [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst) - [Commits](pallets/jinja@3.0.3...3.1.4) Updates `werkzeug` from 1.0.0 to 3.0.3 - [Release notes](https://github.com/pallets/werkzeug/releases) - [Changelog](https://github.com/pallets/werkzeug/blob/main/CHANGES.rst) - [Commits](pallets/werkzeug@1.0.0...3.0.3) Updates `flask` from 1.1.2 to 2.2.5 - [Release notes](https://github.com/pallets/flask/releases) - [Changelog](https://github.com/pallets/flask/blob/main/CHANGES.rst) - [Commits](pallets/flask@1.1.2...2.2.5) Updates `sentry-sdk` from 1.7.2 to 1.14.0 - [Release notes](https://github.com/getsentry/sentry-python/releases) - [Changelog](https://github.com/getsentry/sentry-python/blob/master/CHANGELOG.md) - [Commits](getsentry/sentry-python@1.7.2...1.14.0) Updates `jinja2` from 3.0.3 to 3.1.4 - [Release notes](https://github.com/pallets/jinja/releases) - [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst) - [Commits](pallets/jinja@3.0.3...3.1.4) Updates `werkzeug` from 1.0.0 to 3.0.3 - [Release notes](https://github.com/pallets/werkzeug/releases) - [Changelog](https://github.com/pallets/werkzeug/blob/main/CHANGES.rst) - [Commits](pallets/werkzeug@1.0.0...3.0.3) Updates `sentry-sdk` from 1.7.2 to 1.14.0 - [Release notes](https://github.com/getsentry/sentry-python/releases) - [Changelog](https://github.com/getsentry/sentry-python/blob/master/CHANGELOG.md) - [Commits](getsentry/sentry-python@1.7.2...1.14.0) Updates `jinja2` from 3.0.3 to 3.1.4 - [Release notes](https://github.com/pallets/jinja/releases) - [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst) - [Commits](pallets/jinja@3.0.3...3.1.4) Updates `flask` from 1.1.2 to 2.2.5 - [Release notes](https://github.com/pallets/flask/releases) - [Changelog](https://github.com/pallets/flask/blob/main/CHANGES.rst) - [Commits](pallets/flask@1.1.2...2.2.5) Updates `jinja2` from 3.0.3 to 3.1.4 - [Release notes](https://github.com/pallets/jinja/releases) - [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst) - [Commits](pallets/jinja@3.0.3...3.1.4) Updates `werkzeug` from 1.0.0 to 3.0.3 - [Release notes](https://github.com/pallets/werkzeug/releases) - [Changelog](https://github.com/pallets/werkzeug/blob/main/CHANGES.rst) - [Commits](pallets/werkzeug@1.0.0...3.0.3) Updates `flask` from 1.1.2 to 2.2.5 - [Release notes](https://github.com/pallets/flask/releases) - [Changelog](https://github.com/pallets/flask/blob/main/CHANGES.rst) - [Commits](pallets/flask@1.1.2...2.2.5) Updates `sentry-sdk` from 1.7.2 to 1.14.0 - [Release notes](https://github.com/getsentry/sentry-python/releases) - [Changelog](https://github.com/getsentry/sentry-python/blob/master/CHANGELOG.md) - [Commits](getsentry/sentry-python@1.7.2...1.14.0) Updates `jinja2` from 3.0.3 to 3.1.4 - [Release notes](https://github.com/pallets/jinja/releases) - [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst) - [Commits](pallets/jinja@3.0.3...3.1.4) Updates `werkzeug` from 1.0.0 to 3.0.3 - [Release notes](https://github.com/pallets/werkzeug/releases) - [Changelog](https://github.com/pallets/werkzeug/blob/main/CHANGES.rst) - [Commits](pallets/werkzeug@1.0.0...3.0.3) Updates `httplib2` from 0.18.0 to 0.19.0 - [Changelog](https://github.com/httplib2/httplib2/blob/master/CHANGELOG) - [Commits](httplib2/httplib2@v0.18.0...v0.19.0) Updates `pyarrow` from 0.17.1 to 14.0.1 - [Commits](apache/arrow@apache-arrow-0.17.1...go/v14.0.1) Updates `flask` from 1.1.2 to 2.2.5 - [Release notes](https://github.com/pallets/flask/releases) - [Changelog](https://github.com/pallets/flask/blob/main/CHANGES.rst) - [Commits](pallets/flask@1.1.2...2.2.5) Updates `sentry-sdk` from 1.7.2 to 1.14.0 - [Release notes](https://github.com/getsentry/sentry-python/releases) - [Changelog](https://github.com/getsentry/sentry-python/blob/master/CHANGELOG.md) - [Commits](getsentry/sentry-python@1.7.2...1.14.0) Updates `jinja2` from 3.0.3 to 3.1.4 - [Release notes](https://github.com/pallets/jinja/releases) - [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst) - [Commits](pallets/jinja@3.0.3...3.1.4) Updates `werkzeug` from 1.0.0 to 3.0.3 - [Release notes](https://github.com/pallets/werkzeug/releases) - [Changelog](https://github.com/pallets/werkzeug/blob/main/CHANGES.rst) - [Commits](pallets/werkzeug@1.0.0...3.0.3) Updates `httplib2` from 0.18.0 to 0.19.0 - [Changelog](https://github.com/httplib2/httplib2/blob/master/CHANGELOG) - [Commits](httplib2/httplib2@v0.18.0...v0.19.0) Updates `pyarrow` from 0.17.1 to 14.0.1 - [Commits](apache/arrow@apache-arrow-0.17.1...go/v14.0.1) Updates `flask` from 1.1.2 to 2.2.5 - [Release notes](https://github.com/pallets/flask/releases) - [Changelog](https://github.com/pallets/flask/blob/main/CHANGES.rst) - [Commits](pallets/flask@1.1.2...2.2.5) Updates `sentry-sdk` from 1.7.2 to 1.14.0 - [Release notes](https://github.com/getsentry/sentry-python/releases) - [Changelog](https://github.com/getsentry/sentry-python/blob/master/CHANGELOG.md) - [Commits](getsentry/sentry-python@1.7.2...1.14.0) Updates `jinja2` from 3.0.3 to 3.1.4 - [Release notes](https://github.com/pallets/jinja/releases) - [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst) - [Commits](pallets/jinja@3.0.3...3.1.4) Updates `werkzeug` from 1.0.0 to 3.0.3 - [Release notes](https://github.com/pallets/werkzeug/releases) - [Changelog](https://github.com/pallets/werkzeug/blob/main/CHANGES.rst) - [Commits](pallets/werkzeug@1.0.0...3.0.3) Updates `numpy` from 1.19.5 to 1.22.0 - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](numpy/numpy@v1.19.5...v1.22.0) --- updated-dependencies: - dependency-name: flask dependency-type: direct:production dependency-group: pip - dependency-name: gunicorn dependency-type: direct:production dependency-group: pip - dependency-name: sentry-sdk dependency-type: direct:production dependency-group: pip - dependency-name: jinja2 dependency-type: direct:production dependency-group: pip - dependency-name: werkzeug dependency-type: direct:production dependency-group: pip - dependency-name: flask dependency-type: direct:production dependency-group: pip - dependency-name: sentry-sdk dependency-type: direct:production dependency-group: pip - dependency-name: jinja2 dependency-type: direct:production dependency-group: pip - dependency-name: werkzeug dependency-type: direct:production dependency-group: pip - dependency-name: sentry-sdk dependency-type: direct:production dependency-group: pip - dependency-name: jinja2 dependency-type: direct:production dependency-group: pip - dependency-name: flask dependency-type: direct:production dependency-group: pip - dependency-name: jinja2 dependency-type: direct:production dependency-group: pip - dependency-name: werkzeug dependency-type: direct:production dependency-group: pip - dependency-name: flask dependency-type: direct:production dependency-group: pip - dependency-name: sentry-sdk dependency-type: direct:production dependency-group: pip - dependency-name: jinja2 dependency-type: direct:production dependency-group: pip - dependency-name: werkzeug dependency-type: direct:production dependency-group: pip - dependency-name: httplib2 dependency-type: direct:production dependency-group: pip - dependency-name: pyarrow dependency-type: direct:production dependency-group: pip - dependency-name: flask dependency-type: direct:production dependency-group: pip - dependency-name: sentry-sdk dependency-type: direct:production dependency-group: pip - dependency-name: jinja2 dependency-type: direct:production dependency-group: pip - dependency-name: werkzeug dependency-type: direct:production dependency-group: pip - dependency-name: httplib2 dependency-type: direct:production dependency-group: pip - dependency-name: pyarrow dependency-type: direct:production dependency-group: pip - dependency-name: flask dependency-type: direct:production dependency-group: pip - dependency-name: sentry-sdk dependency-type: direct:development dependency-group: pip - dependency-name: jinja2 dependency-type: direct:development dependency-group: pip - dependency-name: werkzeug dependency-type: direct:production dependency-group: pip - dependency-name: numpy dependency-type: direct:production dependency-group: pip ... 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Bump the pip group across 7 directories with 8 updates #479

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Bump the pip group across 7 directories with 8 updates #480

Bump the pip group across 7 directories with 8 updates #480

dependabot bot commented on behalf of github May 6, 2024 •

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Bump the pip group across 7 directories with 8 updates #480

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Bump the pip group across 7 directories with 8 updates #480

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2.2.5

2.2.4

2.2.3

2.2.2

2.2.1

2.2.0

2.1.3

2.1.2

2.1.1

Version 2.2.5

Version 2.2.4

Version 2.2.3

Version 2.2.2

Version 2.2.1

Version 2.2.0

Gunicorn 22.0 has been released

Gunicorn 21.2.0 has been released

1.14.0

Various fixes & improvements

1.13.0

Various fixes & improvements

1.14.0

Various fixes & improvements

1.13.0

Various fixes & improvements

3.1.4

3.1.3

3.1.2

3.1.1

3.1.0

Version 3.1.4

Version 3.1.3

Version 3.1.2

Version 3.1.1

Version 3.1.0

3.0.3

3.0.2

3.0.1

3.0.0

2.3.8

2.3.7

2.3.6

2.3.5

Version 3.0.3

Version 3.0.2

Version 3.0.1

Version 3.0.0

2.2.5

2.2.4

2.2.3

2.2.2

2.2.1

2.2.0

2.1.3

2.1.2

2.1.1

Version 2.2.5

Version 2.2.4

Version 2.2.3

Version 2.2.2

Version 2.2.1

Version 2.2.0

1.14.0

Various fixes & improvements

1.13.0

Various fixes & improvements

1.14.0

Various fixes & improvements

1.13.0

Various fixes & improvements

3.1.4

3.1.3

3.1.2

dependabot bot commented on behalf of github May 6, 2024 •

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