Skip to content
@AndersenLab

Andersen Lab

Johns Hopkins University

Pinned Loading

  1. CAENDR CAENDR Public

    HTML 4 3

Repositories

Showing 10 of 192 repositories
  • nemascan-sims-nf Public

    Nextflow workflow for running GWA simulations

    AndersenLab/nemascan-sims-nf’s past year of commit activity
    Nextflow 0 0 2 0 Updated Apr 16, 2025
  • variantanno-sh Public

    Shells scripts to run tools (SIFT, VEP, ANNOVAR) to annotate variants in selfing Caenorhabditis WI VCFs

    AndersenLab/variantanno-sh’s past year of commit activity
    Shell 0 0 0 0 Updated Apr 14, 2025
  • caendrprep-nf Public

    A Nextflow workflow for performing all of the analyses downstream of variant and isotype calling in preparation for a CaeNDR data release

    AndersenLab/caendrprep-nf’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Apr 9, 2025
  • gtcheck-nf Public

    Nextflow workflow for checking sample variants against known variants to verify identity

    AndersenLab/gtcheck-nf’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Apr 8, 2025
  • trim-fq-nf Public
    AndersenLab/trim-fq-nf’s past year of commit activity
    Nextflow 0 MIT 1 2 0 Updated Apr 8, 2025
  • wi-gatk Public

    The new GATK-based pipeline for wild isolate C. elegans strains

    AndersenLab/wi-gatk’s past year of commit activity
    Nextflow 1 2 6 0 Updated Apr 7, 2025
  • ce_cb_ct_betatubulin Public
    AndersenLab/ce_cb_ct_betatubulin’s past year of commit activity
    PostScript 0 0 0 0 Updated Apr 6, 2025
  • Ce_geneAnno-sh Public

    This repository contains the scripts used to assess the presence/absence of Caenorhabditis elegans ref genome genes across all wild strains. Genes are classified as "core", "soft-core", "rare", or "private" based on the frequency at which they occur in wild strains.

    AndersenLab/Ce_geneAnno-sh’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 4, 2025
  • andersenlab.github.io Public

    Andersen Lab Website

    AndersenLab/andersenlab.github.io’s past year of commit activity
    HTML 2 MIT 3 0 2 Updated Mar 19, 2025
  • alignment-nf Public

    A nextflow pipeline for genome sequences alignment

    AndersenLab/alignment-nf’s past year of commit activity
    Nextflow 1 MIT 0 1 0 Updated Mar 14, 2025
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…