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@AndersenLab

Andersen Lab

Johns Hopkins University

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Repositories

Showing 10 of 188 repositories
  • isotype-nf Public

    Nextflow pipeline for calling isotype groups

    AndersenLab/isotype-nf’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 5, 2025
  • caenorhabditis_colors Public

    Color codes for Caenorhabditis species and strains

    AndersenLab/caenorhabditis_colors’s past year of commit activity
    0 0 0 0 Updated Mar 4, 2025
  • pathogenDiscovery-sh Public

    C. elegans pathogen discovery through taxonomic classification from unaligned wild strains reads

    AndersenLab/pathogenDiscovery-sh’s past year of commit activity
    Shell 0 0 0 0 Updated Mar 4, 2025
  • andersenlab.github.io Public

    Andersen Lab Website

    AndersenLab/andersenlab.github.io’s past year of commit activity
    HTML 2 MIT 3 0 2 Updated Mar 4, 2025
  • NemaScan Public

    GWA Mapping and Simulation with C. elegans, C. tropicalis, and C. briggsae

    AndersenLab/NemaScan’s past year of commit activity
    R 2 3 8 0 Updated Feb 28, 2025
  • alignment-nf Public

    A nextflow pipeline for genome sequences alignment

    AndersenLab/alignment-nf’s past year of commit activity
    Nextflow 1 MIT 0 1 0 Updated Feb 27, 2025
  • wi-gatk Public

    The new GATK-based pipeline for wild isolate C. elegans strains

    AndersenLab/wi-gatk’s past year of commit activity
    Nextflow 1 2 6 0 Updated Feb 27, 2025
  • delly-nf Public

    Nextflow workflow for calling INDELs with delly

    AndersenLab/delly-nf’s past year of commit activity
    Nextflow 0 0 0 0 Updated Feb 26, 2025
  • VCF-kit Public

    VCF-kit: Assorted utilities for the variant call format

    AndersenLab/VCF-kit’s past year of commit activity
    Python 126 MIT 25 19 0 Updated Feb 20, 2025
  • Ce_geneAnno-sh Public

    This repository contains the scripts used to assess the presence/absence of Caenorhabditis elegans ref genome genes across all wild strains. Genes are classified as "core", "soft-core", "rare", or "private" based on the frequency at which they occur in wild strains.

    AndersenLab/Ce_geneAnno-sh’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 17, 2025
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