0.940-stable

Download the source code: angsd0.940.tar.gz

Installation:

wget https://github.com/ANGSD/angsd/releases/download/0.940/angsd0.940.tar.gz;
tar xf angsd0.940.tar.gz;
cd htslib; make;
cd ..; cd angsd;
make HTSSRC=../htslib;

What's Changed

• [chore] Set crypto_try g++ to cxx; redirect output to /dev/null by @isinaltinkaya in #511
• [chore] Merge master to branch by @isinaltinkaya in #532
• [fix]: Fix assert bug related to DNDEBUG flags #527 by @isinaltinkaya in #533

Full Changelog: 0.938...0.940

0.938-stable

Download the source code: angsd0.938.tar.gz

wget https://github.com/ANGSD/angsd/releases/download/0.938/angsd0.938.tar.gz;
tar xf angsd0.938.tar.gz;
cd htslib;
make;
cd ..;
cd angsd;
make HTSSRC=../htslib;

What's Changed

• banded DP algorithm for SAF, realSFS by @nspope in #330
• fixed underflow bug causing segfault in new bandedDP branch by @nspope in #334
• Merging master into nspope by @ANGSD in #410
• merging the master branch into the banded so the banded is up to date by @ANGSD in #451
• [fix] Nasty bug that would affect reading if all cigars was none C,X,… by @ANGSD in #456
• Master branch now contains the banded saf estimation together with working haploid version by @ANGSD in #452
• doc: Add systemwide and submodule by @isinaltinkaya in #462
• fix Fix smallBam link error by @isinaltinkaya in #472
• [fix,feat] Fix simulated glf 0depth, add minInd by @isinaltinkaya in #484
• [bugfix]: Fix beagle underscore parsing in contig names by @isinaltinkaya in #492
• fetch master by @isinaltinkaya in #496
• [fixleak]: Fix memory leaks in beagleReader by @isinaltinkaya in #498
• [fix] Allow tab separated parsing for beagle by @isinaltinkaya in #497
• [fix] unlogged banded SAF output in -doSaf 4 (beagle input); fix conflict by @isinaltinkaya in #500
• [fixtest] Fix printing log to logfile in testBeagleReader by @isinaltinkaya in #507
• [feat,make] Add detect if -lcrypto is available on the system by @isinaltinkaya in #508

Full Changelog: 0.936...0.938

0.936-stable

Download the source code: angsd0.936.tar.gz

wget https://github.com/ANGSD/angsd/releases/download/0.936/angsd0.936.tar.gz;
tar xf angsd0.936.tar.gz;
cd htslib;
make;
cd ..;
cd angsd;
make HTSSRC=../htslib;

What's Changed

• Mcall by @ANGSD in #389
• Add htslib as submodule; Add GitHub Actions workflow for build test by @isinaltinkaya in #442
• [chore]: Remove travis, replace travis badge by @isinaltinkaya in #443
• [feat] htslib: Add systemwide htslib option by @isinaltinkaya in #444

Full Changelog: 0.935...0.936

0.935

Full Changelog: 0.934...0.935

0.934-stable

Download the source code: angsd0.934.tar.gz

wget https://github.com/ANGSD/angsd/releases/download/0.934/angsd0.934.tar.gz;
tar xf angsd0.934.tar.gz;
cd htslib;
make;
cd ..;
cd angsd;
make HTSSRC=../htslib;

What's Changed

• filter by frequency of heterozygote genotypes by @nspope in #294
• Fix for HTSlib linking issues (and HTSlib compilation for TravisCI) by @YourePrettyGood in #372

New Contributors

• @YourePrettyGood made their first contribution in #372

Full Changelog: 0.933...0.934