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Fixed optional typing on non-serializable types #2939

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Describe changes

This code:

from typing import Optional

from zenml import step, pipeline
from sklearn.neighbors import NearestNeighbors
import numpy as np


@step
def one():
    X = np.array([[1, 1], [2, 2]])
    return NearestNeighbors().fit(X)


@step
def two(a: Optional[int] = None, nn: Optional[NearestNeighbors] = None):
    pass


@pipeline()
def simple_pipeline():
    nn = one()
    two(nn=None, a=None)


simple_pipeline()

Was failing with the following error message:

│    404 │   def _unknown_type_schema(self, obj: Any) -> CoreSchema:                               │
│ ❱  405 │   │   raise PydanticSchemaGenerationError(                                              │
│    406 │   │   │   f'Unable to generate pydantic-core schema for {obj!r}. '                      │
│    407 │   │   │   'Set `arbitrary_types_allowed=True` in the model_config to ignore this error  │
│    408 │   │   │   ' or implement `__get_pydantic_core_schema__` on your type to fully support   │
╰──────────────────────────────────────────────────────────────────────────────────────────────────╯
PydanticSchemaGenerationError: Unable to generate pydantic-core schema for <class 'sklearn.neighbors._unsupervised.NearestNeighbors'>. Set `arbitrary_types_allowed=True` in the model_config to ignore this error or 
implement `__get_pydantic_core_schema__` on your type to fully support it.

If you got this error by calling handler(<some type>) within `__get_pydantic_core_schema__` then you likely need to call `handler.generate_schema(<some type>)` since we do not call `__get_pydantic_core_schema__` on 
`<some type>` otherwise to avoid infinite recursion.

For further information visit https://errors.pydantic.dev/2.7/u/schema-for-unknown-type

def two(a: Optional[int] = None, nn: Optional[NearestNeighbors] = None):

While primitive types allowed for optional typing, non-serializable types like NearestNeighbors lead to pydantic errors, as the utility functions were only checking serializable types (as the assumption probably was that at this point we are handling only parameters, not artifacts).

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@AlexejPenner AlexejPenner requested a review from schustmi August 21, 2024 10:11
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@github-actions github-actions bot added internal To filter out internal PRs and issues bug Something isn't working labels Aug 21, 2024
src/zenml/steps/entrypoint_function_utils.py Outdated Show resolved Hide resolved
src/zenml/steps/entrypoint_function_utils.py Outdated Show resolved Hide resolved
src/zenml/steps/entrypoint_function_utils.py Outdated Show resolved Hide resolved
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@schustmi schustmi left a comment

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Also, this really screams for a test case

@AlexejPenner
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Also, this really screams for a test case

already had some, are any obvious ones missing?

@AlexejPenner AlexejPenner requested a review from schustmi August 27, 2024 12:23
value=(annotation, ...),
)
validation_model_class(value=value)
except Exception:
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Should this be

try:
  ...
except ValidationError:
  raise
except Exception:
  ...

instead? In case pydantic fails with a regular validation error, we actually want to raise that because it means the types don't match right?

validation_model_class(value=value)
except Exception:
# If Pydantic can't handle it, fall back to isinstance
if not isinstance(value, annotation):
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Also this might fail with the raw annotation:

isinstance(int, Union[int, str])

# TypeError: Subscripted generics cannot be used with class and instance checks

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Actually I have a more general question regarding this PR:

This is not a json-serializable object, which means by our definition it can never be a parameter. This means this whole PR is related to a step input, which is of a non-json serializable type, for which there is a None default value and no artifact is being passed to it. Is that correct?

If yes, there might be other simpler solutions to prevent this case from even getting to this parameter validation method.

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schustmi commented Aug 27, 2024

I'm still not entirely sure how to handle this. On the one hand, it would be nice to have your code work as is. On the other hand, if someone now we're to switch the default value to something Non-Null, we would fail and say a parameter has to be JSON-serializable, which also seems weird.

In case we want this though, I think we could achieve this by allowing arbitrary types in case the value is None:

def _validate_parameter_input_value(
  self, parameter: inspect.Parameter, value: Any
) -> None:
  arbitrary_types_allowed = value is None
  config_dict = ConfigDict(arbitrary_types_allowed=arbitrary_types_allowed)
  ...

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Closing in favor of #3215

@schustmi schustmi closed this Nov 25, 2024
@AlexejPenner AlexejPenner deleted the bugfix/GROW-96-fix-optional-typing branch November 26, 2024 13:49
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