[imaging_browser] Add AcquisitionDate field in the files table (aces#…

…6892)

This adds an AcquisitionDate column in the files table where the acquisition date of the files will be stored. If none are available for the file, then it will default to NULL.

    Resolves aces#6883 

See also: aces/Loris-MRI#553 and  aces/Loris-MRI#554

CHANGELOG.md

@@ -18,6 +18,7 @@ Quality Control, and Behavioural Quality Control. (PR #6041)
 - Addition of a new `account_request_date` in `users` table that will be used when
 requesting a new account and will be displayed in the User Accounts module (PR #6191)
 - Candidate's age can be retrieved from the Candidate class in days, months, or years (PR #5945)
+- An `AcquisitionDate` field has been added to the `files` table (PR #6892)
 #### Bug Fixes
 - *Add item here*
 ### Modules

SQL/0000-00-00-schema.sql

@@ -562,6 +562,7 @@ CREATE TABLE `files` (
   `HrrtArchiveID` int(11) default NULL,
   `ScannerID` int(10) unsigned default NULL,
   `AcqOrderPerModality` int(11) default NULL,
+  `AcquisitionDate` date default NULL,
   PRIMARY KEY  (`FileID`),
   KEY `file` (`File`),
   KEY `sessionid` (`SessionID`),

SQL/New_patches/2020-08-10_add_AcquisitionDate_to_files.sql

@@ -0,0 +1,13 @@
+
+ALTER TABLE files ADD COLUMN `AcquisitionDate` date DEFAULT NULL;
+
+UPDATE 
+  files f, 
+  parameter_file pf, 
+  parameter_type pt
+SET 
+  f.AcquisitionDate=pf.Value
+WHERE
+  f.FileID=pf.FileID 
+  AND pf.ParameterTypeID=pt.ParameterTypeID 
+  AND pt.Name='acquisition_date';

modules/imaging_browser/php/imagingbrowserrowprovisioner.class.inc

@@ -185,7 +185,7 @@ class ImagingBrowserRowProvisioner extends \LORIS\Data\Provisioners\DBRowProvisi
               Project.Name as project,
               s.Visit_label as visitLabel,
               $PendingFailSubquery as Visit_QC_Status,
-              DATE_FORMAT(MIN(pf.Value), \"%Y-%m-%d\") as First_Acquisition,
+              DATE_FORMAT(MIN(f.AcquisitionDate), \"%Y-%m-%d\") as First_Acquisition,
               FROM_UNIXTIME(MIN(f.InsertTime)) as First_Insertion,
               FROM_UNIXTIME(MAX(fqc.QCLastChangeTime)) as Last_QC,
               $NewDataSubquery as New_Data,
@@ -203,8 +203,6 @@ class ImagingBrowserRowProvisioner extends \LORIS\Data\Provisioners\DBRowProvisi
               LEFT JOIN Project ON (s.ProjectID=Project.ProjectID)
               JOIN files f ON (f.SessionID=s.ID)
               LEFT JOIN files_qcstatus fqc ON (fqc.FileID=f.FileID)
-              JOIN parameter_file pf ON (f.FileID=pf.FileID)
-              JOIN parameter_type pt USING (ParameterTypeID)
               LEFT JOIN mri_scan_type modality ON
                 (f.AcquisitionProtocolID=modality.ID)
               $left_joins

modules/imaging_browser/php/viewsession.class.inc

@@ -220,10 +220,7 @@ class ViewSession extends \NDB_Form
             $AcquisitionProtocol = $FileObj->getAcquisitionProtocol();
             $CoordinateSpace     = $FileObj->getParameter('CoordinateSpace');
             $Algorithm           = $FileObj->getParameter('Algorithm');
-            $AcquisitionDate     = $this->_getDate(
-                $FileObj,
-                'acquisition_date'
-            );
+            $AcquisitionDate     = $FileObj->getParameter('AcquisitionDate');
             $ProcDate            = $this->_getDate(
                 $FileObj,
                 'processing:processing_date'