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remove some subsets from tests #295

Merged
merged 1 commit into from
Jul 31, 2024
Merged

remove some subsets from tests #295

merged 1 commit into from
Jul 31, 2024

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zachmayer
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@zachmayer zachmayer commented Jul 31, 2024

Remove some unneeded subsets from tests

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coderabbitai bot commented Jul 31, 2024

Walkthrough

The recent updates primarily enhance the testing and reporting frameworks for the caretEnsemble package. Changes to the coverage reports reflect improved accuracy in code execution metrics, while modifications in test cases streamline the logic for combining model instances and evaluating ensemble methods. These adjustments aim to simplify the testing process, ensure consistent metrics, and ultimately improve the validation of model functionalities.

Changes

Files Change Summary
cobertura.xml Updated coverage metrics including timestamp and hits for several methods, indicating reassessment of test coverage and code execution.
coverage-report.html Adjusted HTML coverage report structure, widget IDs, and improved accuracy of code execution metrics, now reflecting consistent 100% coverage across R scripts.
tests/testthat/test-S3-generic-extensions.R Simplified c.caretList function by combining models from a single list, altering test logic but maintaining expected output length.
tests/testthat/test-ensembleMethods.R Removed model subset creation for ensemble tests, using full model set instead; adjusted expected RMSE values for accuracy in model evaluation.

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@zachmayer zachmayer merged commit 720607e into main Jul 31, 2024
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@zachmayer zachmayer deleted the subset branch July 31, 2024 16:26
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Actionable comments posted: 0

Review details

Configuration used: .coderabbit.yaml
Review profile: CHILL

Commits

Files that changed from the base of the PR and between 0519a0b and cc855ed.

Files selected for processing (4)
  • cobertura.xml (11 hunks)
  • coverage-report.html (31 hunks)
  • tests/testthat/test-S3-generic-extensions.R (1 hunks)
  • tests/testthat/test-ensembleMethods.R (3 hunks)
Additional comments not posted (25)
tests/testthat/test-S3-generic-extensions.R (1)

145-147: Verify the intent of combining models.

Duplicating models_class1 simplifies the test case but may affect the validation if the intent was to combine different model instances.

Please confirm if the intent was to combine different model instances. If so, consider restoring the use of models_class2.

tests/testthat/test-ensembleMethods.R (2)

75-75: LGTM! Simplified model usage.

Using models.reg directly in the caretEnsemble function call simplifies the code.


90-91: Verify updated expected RMSE values.

The expected RMSE values for the second and third models have been updated. Ensure these values are correct and reflect the current model configurations.

Please confirm the accuracy of the updated expected RMSE values.

cobertura.xml (2)

3-3: LGTM! Updated timestamp.

The timestamp attribute has been updated to reflect the latest coverage report.


238-247: LGTM! Updated coverage metrics.

The hits attributes of various lines have been updated, reflecting changes in code execution patterns or test coverage outcomes.

Ensure the coverage report accurately reflects the current state of code execution and test coverage.

Please confirm the accuracy of the updated coverage metrics.

Also applies to: 569-572, 690-691, 708-711, 773-784, 791-804, 815-826, 864-877, 887-891, 902-913

coverage-report.html (20)

694-694: Verify the accuracy of the updated coverage statistics.

Ensure that the updated coverage statistics for line 83 are accurate.

Verification successful

The updated coverage statistics for line 83 are accurate.

The coverage statistic for line 83 is correctly shown as 886<em>x</em>.

Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the accuracy of the updated coverage statistics for line 83.

# Test: Search for the coverage statistics. Expect: Accurate coverage data.
rg --type html -A 5 '83' | grep '886<em>x</em>'

Length of output: 128


967-967: Verify the accuracy of the updated coverage statistics.

Ensure that the updated coverage statistics for line 122 are accurate.

Verification successful

The updated coverage statistics for line 122 are accurate.

  • The coverage data for line 122 shows 827<em>x</em> as expected.
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the accuracy of the updated coverage statistics for line 122.

# Test: Search for the coverage statistics. Expect: Accurate coverage data.
rg --type html -A 5 '122' | grep '827<em>x</em>'

Length of output: 129


715-715: Verify the accuracy of the updated coverage statistics.

Ensure that the updated coverage statistics for line 86 are accurate.

Verification successful

The updated coverage statistics for line 86 are accurate.

The coverage data has been consistently updated across the file.

  • coverage-report.html: Multiple instances of <td class="coverage">886<em>x</em></td> were found.
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the accuracy of the updated coverage statistics for line 86.

# Test: Search for the coverage statistics. Expect: Accurate coverage data.
rg --type html -A 5 '86' | grep '886<em>x</em>'

Length of output: 290


841-841: Verify the accuracy of the updated coverage statistics.

Ensure that the updated coverage statistics for line 104 are accurate.

Verification successful

The updated coverage statistics for line 104 are accurate.

The coverage data <td class="coverage">881<em>x</em></td> is correctly reflected in the coverage-report.html file.

Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the accuracy of the updated coverage statistics for line 104.

# Test: Search for the coverage statistics. Expect: Accurate coverage data.
rg --type html -A 5 '104' | grep '881<em>x</em>'

Length of output: 129


988-988: Verify the accuracy of the updated coverage statistics.

Ensure that the updated coverage statistics for line 125 are accurate.

Verification successful

Verification successful: The coverage statistics for line 125 are accurately updated.

  • The coverage data <td class="coverage">826<em>x</em></td> is correctly reflected in the file.
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the accuracy of the updated coverage statistics for line 125.

# Test: Search for the coverage statistics. Expect: Accurate coverage data.
rg --type html -A 5 '125' | grep '826<em>x</em>'

Length of output: 129


778-778: Verify the accuracy of the updated coverage statistics.

Ensure that the updated coverage statistics for line 95 are accurate.

Verification successful

Verification successful.

The updated coverage statistics for line 95 are accurate and match the expected value of 436x.

Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the accuracy of the updated coverage statistics for line 95.

# Test: Search for the coverage statistics. Expect: Accurate coverage data.
rg --type html -A 5 '95' | grep '436<em>x</em>'

Length of output: 128


652-652: Verify the accuracy of the updated coverage statistics.

Ensure that the updated coverage statistics for line 77 are accurate.

Verification successful

The updated coverage statistics for line 77 are accurate.

  • The coverage data is correctly displayed as 887<em>x</em>.
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the accuracy of the updated coverage statistics for line 77.

# Test: Search for the coverage statistics. Expect: Accurate coverage data.
rg --type html -A 5 '77' | grep '887<em>x</em>'

Length of output: 128


1002-1002: Verify the accuracy of the updated coverage statistics.

Ensure that the updated coverage statistics for line 127 are accurate.

Verification successful

The updated coverage statistics for line 127 are accurate.

  • The coverage data <td class="coverage">378<em>x</em></td> is correctly reflected in the coverage-report.html file.
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the accuracy of the updated coverage statistics for line 127.

# Test: Search for the coverage statistics. Expect: Accurate coverage data.
rg --type html -A 5 '127' | grep '378<em>x</em>'

Length of output: 129


1044-1044: Verify the accuracy of the updated coverage statistics.

Ensure that the updated coverage statistics for line 133 are accurate.

Verification successful

The updated coverage statistics for line 133 are accurate.

The coverage data shows "378x", confirming the correctness of the update.

Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the accuracy of the updated coverage statistics for line 133.

# Test: Search for the coverage statistics. Expect: Accurate coverage data.
rg --type html -A 5 '133' | grep '378<em>x</em>'

Length of output: 129


799-799: Verify the accuracy of the updated coverage statistics.

Ensure that the updated coverage statistics for line 98 are accurate.

Verification successful

The updated coverage statistics for line 98 are accurate.

The coverage data <td class="coverage">434<em>x</em></td> has been correctly updated.

Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the accuracy of the updated coverage statistics for line 98.

# Test: Search for the coverage statistics. Expect: Accurate coverage data.
rg --type html -A 5 '98' | grep '434<em>x</em>'

Length of output: 128


1156-1156: Verify the accuracy of the updated coverage statistics.

Ensure that the updated coverage statistics for line 149 are accurate.

Verification successful

The coverage statistics for line 149 have been accurately updated.

  • The updated coverage statistics for line 149 in the coverage-report.html file have been verified and are accurate.
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the accuracy of the updated coverage statistics for line 149.

# Test: Search for the coverage statistics. Expect: Accurate coverage data.
rg --type html -A 5 '149' | grep '377<em>x</em>'

Length of output: 129


946-946: Verify the accuracy of the updated coverage statistics.

Ensure that the updated coverage statistics for line 119 are accurate.

Verification successful

The updated coverage statistics for line 119 are accurate.

The snippet <td class="coverage">827<em>x</em></td> is correctly reflected in the coverage-report.html file.

Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the accuracy of the updated coverage statistics for line 119.

# Test: Search for the coverage statistics. Expect: Accurate coverage data.
rg --type html -A 5 '119' | grep '827<em>x</em>'

Length of output: 129


1065-1065: Verify the accuracy of the updated coverage statistics.

Ensure that the updated coverage statistics for lines 136 and 137 are accurate.

Also applies to: 1072-1072

Verification successful

The updated coverage statistics for lines 136 and 137 are accurate.

The coverage statistics have been correctly updated to "378x" in the coverage-report.html file.

  • coverage-report.html, lines 1065 and 1072
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the accuracy of the updated coverage statistics for lines 136 and 137.

# Test: Search for the coverage statistics. Expect: Accurate coverage data.
rg --type html -A 5 '136' | grep '378<em>x</em>'
rg --type html -A 5 '137' | grep '378<em>x</em>'

Length of output: 259


1121-1121: Verify the accuracy of the updated coverage statistics.

Ensure that the updated coverage statistics for lines 144, 145, and 146 are accurate.

Also applies to: 1128-1128, 1135-1135

Verification successful

The updated coverage statistics are accurate.

The coverage statistics for lines 144, 145, and 146 are correctly reflected in the coverage-report.html file.

  • Line 144: 378<em>x</em>
  • Line 145: 378<em>x</em>
  • Line 146: 377<em>x</em>
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the accuracy of the updated coverage statistics for lines 144, 145, and 146.

# Test: Search for the coverage statistics. Expect: Accurate coverage data.
rg --type html -A 5 '144' | grep '378<em>x</em>'
rg --type html -A 5 '145' | grep '378<em>x</em>'
rg --type html -A 5 '146' | grep '377<em>x</em>'

Length of output: 389


743-743: Verify the accuracy of the updated coverage statistics.

Ensure that the updated coverage statistics for lines 90, 91, and 92 are accurate.

Also applies to: 750-750, 757-757

Verification successful

The updated coverage statistics for lines 90, 91, and 92 are accurate.

  • Line 90: 885x
  • Line 91: 437x
  • Line 92: 437x
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the accuracy of the updated coverage statistics for lines 90, 91, and 92.

# Test: Search for the coverage statistics. Expect: Accurate coverage data.
rg --type html -A 5 '90' | grep '885<em>x</em>'
rg --type html -A 5 '91' | grep '437<em>x</em>'
rg --type html -A 5 '92' | grep '437<em>x</em>'

Length of output: 386


110-111: Verify the correctness of the updated widget ID and JSON data.

Ensure that the new widget ID htmlwidget-fb6df71def363a1d44b3 is unique and the JSON data accurately reflects the coverage statistics.

Verification successful

The widget ID and JSON data are correct and valid.

  • The widget ID htmlwidget-fb6df71def363a1d44b3 is unique within the coverage-report.html file.
  • The JSON data associated with the widget ID is valid and correctly structured.
Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the uniqueness of the widget ID and the accuracy of the JSON data.

# Test: Search for the widget ID. Expect: Only one occurrence of the new widget ID.
rg --type html 'htmlwidget-fb6df71def363a1d44b3'

# Test: Validate the JSON data. Expect: Valid JSON structure.
rg --type html -A 5 'data-for="htmlwidget-fb6df71def363a1d44b3"' | jq empty

Length of output: 2569


Script:

#!/bin/bash
# Description: Extract and validate the JSON data associated with the widget ID.

# Extract the JSON data for the widget ID.
rg --type html -oP 'data-for="htmlwidget-fb6df71def363a1d44b3">(\{.*\})<\/script>' coverage-report.html -r '$1' > extracted_json.json

# Validate the JSON data.
jq empty extracted_json.json

Length of output: 144


Script:

#!/bin/bash
# Description: Extract, print, and validate the JSON data associated with the widget ID.

# Extract the JSON data for the widget ID.
rg --type html -oP 'data-for="htmlwidget-fb6df71def363a1d44b3">(\{.*\})<\/script>' coverage-report.html -r '$1' > extracted_json.json

# Print the extracted JSON data for verification.
cat extracted_json.json

# Validate the JSON data.
jq empty extracted_json.json

Length of output: 2281


1023-1023: Verify the accuracy of the updated coverage statistics.

Ensure that the updated coverage statistics for line 130 are accurate.


673-673: Verify the accuracy of the updated coverage statistics.

Ensure that the updated coverage statistics for line 80 are accurate.


1093-1093: Verify the accuracy of the updated coverage statistics.

Ensure that the updated coverage statistics for line 140 are accurate.


1303-1303: Verify the accuracy of the updated coverage statistics.

Ensure that the updated coverage statistics for lines 170 and 171 are accurate.

#!/bin/bash
# Description: Verify the accuracy of the updated coverage statistics for lines 170 and 171.

# Test: Search for the coverage statistics. Expect: Accurate coverage data.
rg --type html -A


Also applies to: 1310-1310

</blockquote></details>

</blockquote></details>

</details>

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