1196 add dose to medium and let to medium

[Derstilon]

requires yaptide/converter#149 to be merged

[grzanka]

Duplication of Quantities stopped working on this branch:

1196.add.dose.to.medium.and.let.to.medium.by.Derstilon.Pull.Request.1233.yaptide_ui.-.Google.Chrome.2023-10-03.22-31-17.mp4

It is working perfectly well on the main branch on github pages deploy:

Proton.broad.beam.58.MeV.in.water.-.Google.Chrome.2023-10-03.22-30-04.mp4

[grzanka]

When running the simulation I get an error from backend:

2023-10-06 21:02:52 INFO:werkzeug:172.21.0.6 - - [06/Oct/2023 19:02:52] "OPTIONS /jobs/direct HTTP/1.0" 200 -
2023-10-06 21:02:52 INFO:werkzeug:172.21.0.6 - - [06/Oct/2023 19:02:52] "POST /jobs/direct HTTP/1.0" 500 -
2023-10-06 21:02:52 Traceback (most recent call last):
2023-10-06 21:02:52   File "/usr/local/lib/python3.10/site-packages/flask/app.py", line 2213, in __call__
2023-10-06 21:02:52     return self.wsgi_app(environ, start_response)
2023-10-06 21:02:52   File "/usr/local/lib/python3.10/site-packages/flask/app.py", line 2193, in wsgi_app
2023-10-06 21:02:52     response = self.handle_exception(e)
2023-10-06 21:02:52   File "/usr/local/lib/python3.10/site-packages/flask_restful/__init__.py", line 298, in error_router
2023-10-06 21:02:52     return original_handler(e)
2023-10-06 21:02:52   File "/usr/local/lib/python3.10/site-packages/flask/app.py", line 2190, in wsgi_app
2023-10-06 21:02:52     response = self.full_dispatch_request()
2023-10-06 21:02:52   File "/usr/local/lib/python3.10/site-packages/flask/app.py", line 1486, in full_dispatch_request
2023-10-06 21:02:52     rv = self.handle_user_exception(e)
2023-10-06 21:02:52   File "/usr/local/lib/python3.10/site-packages/flask_restful/__init__.py", line 298, in error_router
2023-10-06 21:02:52     return original_handler(e)
2023-10-06 21:02:52   File "/usr/local/lib/python3.10/site-packages/flask/app.py", line 1484, in full_dispatch_request
2023-10-06 21:02:52     rv = self.dispatch_request()
2023-10-06 21:02:52   File "/usr/local/lib/python3.10/site-packages/flask/app.py", line 1469, in dispatch_request
2023-10-06 21:02:52     return self.ensure_sync(self.view_functions[rule.endpoint])(**view_args)
2023-10-06 21:02:52   File "/usr/local/lib/python3.10/site-packages/flask_restful/__init__.py", line 489, in wrapper
2023-10-06 21:02:52     resp = resource(*args, **kwargs)
2023-10-06 21:02:52   File "/usr/local/lib/python3.10/site-packages/flask/views.py", line 109, in view
2023-10-06 21:02:52     return current_app.ensure_sync(self.dispatch_request)(**kwargs)
2023-10-06 21:02:52   File "/usr/local/lib/python3.10/site-packages/flask_restful/__init__.py", line 604, in dispatch_request
2023-10-06 21:02:52     resp = meth(*args, **kwargs)
2023-10-06 21:02:52   File "/usr/local/app/yaptide/routes/utils/decorators.py", line 24, in wrapper
2023-10-06 21:02:52     return f(user, *args, **kwargs)
2023-10-06 21:02:52   File "/usr/local/app/yaptide/routes/celery_routes.py", line 79, in post
2023-10-06 21:02:52     files_dict, number_of_all_primaries = files_dict_with_adjusted_primaries(payload_dict=payload_dict)
2023-10-06 21:02:52   File "/usr/local/app/yaptide/utils/sim_utils.py", line 145, in files_dict_with_adjusted_primaries
2023-10-06 21:02:52     return check_and_convert_payload_to_files_dict(new_payload_dict), number_of_all_primaries
2023-10-06 21:02:52   File "/usr/local/app/yaptide/utils/sim_utils.py", line 75, in check_and_convert_payload_to_files_dict
2023-10-06 21:02:52     files_dict = convert_editor_dict_to_files_dict(editor_dict=payload_dict["input_json"],
2023-10-06 21:02:52   File "/usr/local/app/yaptide/utils/sim_utils.py", line 63, in convert_editor_dict_to_files_dict
2023-10-06 21:02:52     files_dict = run_parser(parser=conv_parser, input_data=editor_dict)
2023-10-06 21:02:52   File "/usr/local/app/yaptide/converter/converter/api.py", line 28, in run_parser
2023-10-06 21:02:52     parser.parse_configs(input_data)
2023-10-06 21:02:52   File "/usr/local/app/yaptide/converter/converter/shieldhit/parser.py", line 30, in parse_configs
2023-10-06 21:02:52     self._parse_geo_mat(json)
2023-10-06 21:02:52   File "/usr/local/app/yaptide/converter/converter/shieldhit/parser.py", line 309, in _parse_geo_mat
2023-10-06 21:02:52     self._parse_materials(json)
2023-10-06 21:02:52   File "/usr/local/app/yaptide/converter/converter/shieldhit/parser.py", line 320, in _parse_materials
2023-10-06 21:02:52     self.geo_mat_config.materials = [
2023-10-06 21:02:52   File "/usr/local/app/yaptide/converter/converter/shieldhit/parser.py", line 321, in <listcomp>
2023-10-06 21:02:52     Material(material["name"], material["sanitizedName"], material["uuid"], material["icru"])
2023-10-06 21:02:52 KeyError: 'sanitizedName'
2023-10-06 21:03:38 INFO:werkzeug:172.21.0.6

On the other hand pyodide converter works well:

[grzanka]

Is it still draft or ready for review?

[grzanka]

Can you update examples and bump examples version to 0.11 ? Otherwise I see

[grzanka]

Converter changes are merged now, maybe you could update the converter in this PR as well and fix the tests ?

[Derstilon]

Is it still draft or ready for review?

I've merged new converter and change status to ready

[grzanka]

Is it still draft or ready for review?

I've merged new converter and change status to ready

OK, I will check it.

[grzanka]

@Derstilon take a look as well at yaptide/yaptide#639
I think that example JSON files in backend test suite needs update as well

[grzanka]

OK

[grzanka]

Needs yaptide/yaptide#639 to be merged first