Set order='F' when raveling group_idx after broadcast

asv_bench/benchmarks/reduce.py

@@ -110,7 +110,7 @@ def setup(self, *args, **kwargs):
 class ChunkReduce2DAllAxes(ChunkReduce):
     def setup(self, *args, **kwargs):
         self.array = np.ones((N, N))
-        self.labels = np.repeat(np.arange(N // 5), repeats=5)
+        self.labels = np.repeat(np.arange(N // 5), repeats=5)[np.newaxis, :]
         self.axis = None
         setup_jit()
 

flox/core.py

@@ -782,16 +782,25 @@ def chunk_reduce(
     )
     groups = grps[0]
 
+    order = "C"
     if nax > 1:
         needs_broadcast = any(
             group_idx.shape[ax] != array.shape[ax] and group_idx.shape[ax] == 1
             for ax in range(-nax, 0)
         )
         if needs_broadcast:
+            # This is the dim=... case, it's a lot faster to ravel group_idx
+            # in fortran order since group_idx is then sorted
+            # I'm seeing 400ms -> 23ms for engine="flox"
+            # Of course we are slower to ravel `array` but we avoid argsorting
+            # both `array` *and* `group_idx` in _prepare_for_flox
             group_idx = np.broadcast_to(group_idx, array.shape[-by.ndim :])
+            if engine == "flox":
+                group_idx = group_idx.reshape(-1, order="F")
+                order = "F"
     # always reshape to 1D along group dimensions
     newshape = array.shape[: array.ndim - by.ndim] + (math.prod(array.shape[-by.ndim :]),)
-    array = array.reshape(newshape)
+    array = array.reshape(newshape, order=order)  # type: ignore[call-overload]
     group_idx = group_idx.reshape(-1)
 
     assert group_idx.ndim == 1
@@ -1814,7 +1823,8 @@ def groupby_reduce(
         Array to be reduced, possibly nD
     *by : ndarray or DaskArray
         Array of labels to group over. Must be aligned with ``array`` so that
-        ``array.shape[-by.ndim :] == by.shape``
+        ``array.shape[-by.ndim :] == by.shape`` or any disagreements in that
+        equality check are for dimensions of size 1 in `by`.
     func : {"all", "any", "count", "sum", "nansum", "mean", "nanmean", \
             "max", "nanmax", "min", "nanmin", "argmax", "nanargmax", "argmin", "nanargmin", \
             "quantile", "nanquantile", "median", "nanmedian", "mode", "nanmode", \

tests/test_core.py

@@ -203,7 +203,7 @@ def test_groupby_reduce(
 def gen_array_by(size, func):
     by = np.ones(size[-1])
     rng = np.random.default_rng(12345)
-    array = rng.random(size)
+    array = rng.random(tuple(6 if s == 1 else s for s in size))
     if "nan" in func and "nanarg" not in func:
         array[[1, 4, 5], ...] = np.nan
     elif "nanarg" in func and len(size) > 1:
@@ -222,8 +222,8 @@ def gen_array_by(size, func):
         pytest.param(4, marks=requires_dask),
     ],
 )
+@pytest.mark.parametrize("size", ((1, 12), (12,), (12, 9)))
 @pytest.mark.parametrize("nby", [1, 2, 3])
-@pytest.mark.parametrize("size", ((12,), (12, 9)))
 @pytest.mark.parametrize("add_nan_by", [True, False])
 @pytest.mark.parametrize("func", ALL_FUNCS)
 def test_groupby_reduce_all(nby, size, chunks, func, add_nan_by, engine):