Add pvacsplice #170
Add pvacsplice #170
Conversation
… also add a task for pvacsplice, pvacsplice workflow input and output to the immuno.wdl
|
the immuno.wdl included in this PR currently doesnt have 'biotypes' and 'aggregate_inclusion_count_limit' since I expect those to be added under pvacseq input in another PR ( #168: https://github.com/wustl-oncology/analysis-wdls/pull/168/files#diff-ed70ea67da14854bdf95f53076b4a4b92111eb531717823eafd5fe7c54271796 ) Follow up: I have added biotypes and aggregate_inclusion_count_limit in immuno wdl input under pvacseq. Note that these 2 inputs are not added to subworkflows and tools pvacseq.wdl yet. |
| @@ -0,0 +1,60 @@ | |||
| version 1.0 | |||
|
|
|||
| task regtools { | |||
There was a problem hiding this comment.
Since regtools is a whole suite of tools, we might want to give this task and file a more specific name in case other parts of it need to be added to workflows in the future.
There was a problem hiding this comment.
im not sure if in the future we plan to integrate more tools beyond regtools for the task of identifying and quantifying reads supporting splicing junctions, thus im naming the tast regtools at the moment. But else, would 'IdentifySpliceVariantJunction' be a good name for the task?
…under pvacseq. Note that these 2 inputs are not added to subworkflows and tools pvacseq.wdl yet
…input will be first, second, unstranded, not RF, FR, XS.
No description provided.