Refactor Crate Sourcing to Flag When Run as Workflow #17
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alexhambley
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Jul 9, 2024
Updated the dockerfile to use a two stage process. Snakemake image is used as the runtime environment. Supports / Partially addresses #17
alexhambley
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Jul 9, 2024
Updated snakemake workflow to work with Dockerfile. Also fixes module not found error by exposing pythonpath. Partially addresses #17
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Jul 12, 2024
- Added get_max_id_from_files method. - If --workflow-ids argument is not provided, created_files.json should contain all workflows downloaded. get_max_id_from_files() finds the maximum ID in the sourced workflows. - Part of wider effort to address #17
This was referenced Aug 5, 2024
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Currently, WorkflowHub is hardcoded in as a constant. This should be a flag when run as a workflow.
e.g.
source -wfhshould run the sourcing on workflow hub production server. Something likesource -wfh devshould run the sourcing on workflow hub development server.Part of a wider refactoring to run this application as a workflow
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