The Workflow4Metabolomics, W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data. It is based on the Galaxy platform.
Normalization (operation applied on each individual spectrum) of preprocessed data
Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.
Homepage: https://galaxyproject.org/
Conda is package manager that among many other things can be used to manage Python packages.
#To install miniconda2
#http://conda.pydata.org/miniconda.html
#To install the R library using conda:
conda install r-batch
#To set an environment:
conda create -n r-batch r-batch`
#To activate the environment:
. activate r-batch
Planemo test using conda: passed
Planemo shed_test: passed
Conda is package manager that among many other things can be used to manage Python packages.
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Planemo test using conda: passed
Planemo shed_test: passed
- Marie Tremblay-Franco @mtremblayfr - French Metabolomics and Fluxomics Infrastructure (MetaboHUB) - MetaToul
- Marion Landi - French Metabolomics and Fluxomics Infrastructure (MetaboHUB) - La plateforme "Exploration du Métabolisme" (PFEM, Clermont-Ferrand)
- Gildas Le Corguillé @lecorguille - ABiMS / IFB - UPMC/CNRS - Station Biologique de Roscoff - France