drop a couple unnecessary variables

weng-lab · Nov 11, 2020 · f3ac213 · f3ac213
1 parent 2f361ce
commit f3ac213
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Showing 2 changed files with 1 addition and 5 deletions.
diff --git a/build.gradle.kts b/build.gradle.kts
@@ -9,7 +9,7 @@ plugins {
 }
 
 group = "com.genomealmanac"
-version = "0.6.0"
+version = "0.6.1"
 val artifactID = "bam-aggregate-task"
 
 repositories {

diff --git a/src/main/kotlin/step/BarcodeMap.kt b/src/main/kotlin/step/BarcodeMap.kt
@@ -19,9 +19,6 @@ private val log = KotlinLogging.logger {}
  */
 fun barcodeMap(regions: List<Region>, alignments: Path, forwardShift: Int = 0, reverseShift: Int = 0, strand: String? = null): Map<String, Map<String, Int>> {
 
-    val values: List<MutableList<Int>> = regions.map {
-        (it.start..it.end).map { 0 }.toMutableList()
-    }
     val queryExtension = max(abs(forwardShift), abs(reverseShift)) + 1
 
     SamReaderFactory.makeDefault().validationStringency(ValidationStringency.SILENT).enable(SamReaderFactory.Option.INCLUDE_SOURCE_IN_RECORDS).open(alignments.toFile()).use {
@@ -43,7 +40,6 @@ fun barcodeMap(regions: List<Region>, alignments: Path, forwardShift: Int = 0, r
                     }
                     val start = pileUpStart(alignment, forwardShift, reverseShift)
                     if (start >= region.start && start <= region.end) {
-                        val coordinate = if (region.strand == '+') start - region.start else region.end - start
                         val barcode = alignment.getAttribute("CB")?.toString()
                         if (barcode === null) return@forEach
                         if (!results.containsKey(barcode)) results[barcode] = mutableMapOf()