👷 NEP29: Run CI and Docs build on Python 3.11 #103
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Bumps [numba](https://github.com/numba/numba) from 0.56.4 to 0.57.0. - [Release notes](https://github.com/numba/numba/releases) - [Commits](numba/numba@0.56.4...0.57.0) Also bumps llvmlite from 0.39.0 to 0.40.0. Includes Python 3.11 wheels!
Bumps [spatialpandas](https://github.com/holoviz/spatialpandas) from 0.4.4 to 0.4.8. - [Release notes](https://github.com/holoviz/spatialpandas/releases) - [Changelog](https://github.com/holoviz/spatialpandas/blob/master/CHANGELOG.md) - [Commits](holoviz/spatialpandas@v0.4.4...v0.4.8) Also bumped datashader from 0.14.2 to 0.14.4 and pyarrow from 9.0.0 to 12.0.0.
Bumps [python](https://github.com/python/cpython) from 3.10.11 to 3.11.3. - [Release notes](https://github.com/python/cpython/releases/tag/v3.11.3) - [Changelog](https://docs.python.org/3/whatsnew/3.11.html) - [Commits](python/cpython@v3.10.11...v3.11.3) Now testing the 'spatial' extras on Python 3.11.
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Unit tests and docs build failing with ___ [doctest] zen3geo.datapipes.datashader.DatashaderRasterizerIterDataPipe ____
127 >>> dp_canvas = IterableWrapper(iterable=[canvas])
128 ...
129 >>> # Rasterize vector point geometries onto blank canvas
130 >>> dp_datashader = dp_canvas.rasterize_with_datashader(
131 ... vector_datapipe=dp_vector
132 ... )
133 ...
134 >>> # Loop or iterate over the DataPipe stream
135 >>> it = iter(dp_datashader)
136 >>> dataarray = next(it)
UNEXPECTED EXCEPTION: AttributeError("module 'inspect' has no attribute 'getargspec'\nThis exception is thrown by __iter__ of DatashaderRasterizerIterDataPipe(agg=None, kwargs={}, source_datapipe=IterableWrapperIterDataPipe, vector_datapipe=IterableWrapperIterDataPipe)")
Traceback (most recent call last):
File "/home/runner/.cache/pypoetry/virtualenvs/zen3geo-wNxkC0DI-py3.11/lib/python3.11/site-packages/toolz/functoolz.py", line 457, in memof
return cache[k]
~~~~~^^^
KeyError: (<datashader.glyphs.points.MultiPointGeometry object at 0x7f92287e3750>, CPUDispatcher(<function LinearAxis.mapper at 0x7f92c7144720>), CPUDispatcher(<function LinearAxis.mapper at 0x7f92c7144720>), <function make_info.<locals>.<lambda> at 0x7f922895b6a0>, CPUDispatcher(<function append at 0x7f922895b920>), False)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/runner/.cache/pypoetry/virtualenvs/zen3geo-wNxkC0DI-py3.11/lib/python3.11/site-packages/datashader/glyphs/glyph.py", line 151, in _expand_aggs_and_cols
append_args = inspect.getargspec(append.py_func).args
^^^^^^^^^^^^^^^^^^
AttributeError: module 'inspect' has no attribute 'getargspec'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.11.3/x64/lib/python3.11/doctest.py", line 1351, in __run
exec(compile(example.source, filename, "single",
File "<doctest zen3geo.datapipes.datashader.DatashaderRasterizerIterDataPipe[14]>", line 1, in <module>
File "/home/runner/.cache/pypoetry/virtualenvs/zen3geo-wNxkC0DI-py3.11/lib/python3.11/site-packages/torch/utils/data/datapipes/_hook_iterator.py", line 173, in wrap_generator
response = gen.send(None)
^^^^^^^^^^^^^^
File "/home/runner/work/zen3geo/zen3geo/zen3geo/datapipes/datashader.py", line 229, in __iter__
raster: xr.DataArray = canvas.points(
^^^^^^^^^^^^^^
File "/home/runner/.cache/pypoetry/virtualenvs/zen3geo-wNxkC0DI-py3.11/lib/python3.11/site-packages/datashader/core.py", line 219, in points
return bypixel(source, self, glyph, agg)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/.cache/pypoetry/virtualenvs/zen3geo-wNxkC0DI-py3.11/lib/python3.11/site-packages/datashader/core.py", line 1260, in bypixel
return bypixel.pipeline(source, schema, canvas, glyph, agg, antialias=antialias)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/.cache/pypoetry/virtualenvs/zen3geo-wNxkC0DI-py3.11/lib/python3.11/site-packages/datashader/utils.py", line 112, in __call__
return lk[cls](head, *rest, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/.cache/pypoetry/virtualenvs/zen3geo-wNxkC0DI-py3.11/lib/python3.11/site-packages/datashader/data_libraries/pandas.py", line 17, in pandas_pipeline
return glyph_dispatch(glyph, df, schema, canvas, summary, antialias=antialias)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/.cache/pypoetry/virtualenvs/zen3geo-wNxkC0DI-py3.11/lib/python3.11/site-packages/datashader/utils.py", line 112, in __call__
return lk[cls](head, *rest, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/.cache/pypoetry/virtualenvs/zen3geo-wNxkC0DI-py3.11/lib/python3.11/site-packages/datashader/data_libraries/pandas.py", line 31, in default
extend = glyph._build_extend(x_mapper, y_mapper, info, append, antialias_stage_2)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/.cache/pypoetry/virtualenvs/zen3geo-wNxkC0DI-py3.11/lib/python3.11/site-packages/toolz/functoolz.py", line 461, in memof
cache[k] = result = func(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/.cache/pypoetry/virtualenvs/zen3geo-wNxkC0DI-py3.11/lib/python3.11/site-packages/datashader/glyphs/points.py", line 235, in _build_extend
@self.expand_aggs_and_cols(append)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/.cache/pypoetry/virtualenvs/zen3geo-wNxkC0DI-py3.11/lib/python3.11/site-packages/datashader/glyphs/glyph.py", line 135, in expand_aggs_and_cols
return self._expand_aggs_and_cols(append, self.ndims, self.antialiased)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/.cache/pypoetry/virtualenvs/zen3geo-wNxkC0DI-py3.11/lib/python3.11/site-packages/datashader/glyphs/glyph.py", line 154, in _expand_aggs_and_cols
append_args = inspect.getargspec(append).args
^^^^^^^^^^^^^^^^^^
AttributeError: module 'inspect' has no attribute 'getargspec'
This exception is thrown by __iter__ of DatashaderRasterizerIterDataPipe(agg=None, kwargs={}, source_datapipe=IterableWrapperIterDataPipe, vector_datapipe=IterableWrapperIterDataPipe)
/home/runner/work/zen3geo/zen3geo/zen3geo/datapipes/datashader.py:136: UnexpectedExceptionNeed to wait for |
Updated actions/checkout and release-drafter/release-drafter to silence deprecated save-state (see https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands), updated pypa/gh-action-pypi-publish to use kebab-case parameters, and updated actions/setup-python for good measure too. All hashes are now followed by the version string as a comment for human readability.
Bumps [datashader](https://github.com/holoviz/datashader) from 0.14.4 to 0.15.0. - [Release notes](https://github.com/holoviz/datashader/releases) - [Changelog](https://github.com/holoviz/datashader/blob/master/CHANGELOG.rst) - [Commits](holoviz/datashader@v0.14.4...v0.15.0)
Pin to numpy==1.23.* no longer needed, as datashader 0.15.0 has been released which contains patch for not using `np.warning` at holoviz/datashader#1176. Reverts a5233e4 in #98.
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Run Continuous Integration tests, workflows and documentation build on Python 3.11. Need to bump spatialpandas, datashader, pyarrow, llvmlite and numba to get Python 3.11 compatible wheels.
Bumps python from 3.10.11 to 3.11.3.
Notes:
spatialextras, that was omitted in 👷 NEP29: Run Continuous Integration on Python 3.11 #89 due to incompatibilities on thedatashader/spatialpandasstack.Supersedes #89 and #29.