🔀 Merge branch 'interactive_pyviz_plots' (#31)

Closes #31 Enable interactive PyViz plots properly.
weiji14 · May 23, 2020 · 3a1e2ec · 3a1e2ec
2 parents 3ff6d60 + 2864d05
commit 3a1e2ec
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diff --git a/Dockerfile b/Dockerfile
@@ -55,6 +55,11 @@ RUN conda activate deepicedrain && \
     rm --recursive ${HOME}/.cache/pip && \
     poetry show
 
+# Install jupyterlab extensions
+RUN conda activate deepicedrain && \
+    jupyter labextension install @pyviz/jupyterlab_pyviz && \
+    jupyter labextension list
+
 # Setup DeepBedMap virtual environment properly
 RUN conda activate deepicedrain && \
     python -m ipykernel install --user --name deepicedrain && \

diff --git a/README.md b/README.md
@@ -39,6 +39,12 @@ Finally, double-check that the libraries have been installed.
 
     poetry show
 
+(Optional) Install jupyterlab extensions for interactive [bokeh](https://bokeh.org) visualizations.
+
+    jupyter labextension install @pyviz/jupyterlab_pyviz
+
+    jupyter labextension list  # ensure that extension is installed
+
 ## Running jupyter lab
 
     conda activate deepicedrain

diff --git a/environment.yml b/environment.yml
@@ -5,6 +5,7 @@ dependencies:
   - conda-forge::geos=3.8.1[md5=7282fbe0c036bacad959c03c05a7eb9a]
   - conda-forge::gmt=6.0.0[md5=dc8ef0c0d63b1fbd0caf761b939a5bc9]
   - conda-forge::gxx_linux-64=7.3.0[md5=170a667cc95fead22a9e38aba0e3486d]
+  - conda-forge::nodejs=13.13.0[md5=cf25f8cee7aad7f417980872d34d8fd6]
   - conda-forge::parallel=20200322[md5=fdfd211013d373cd36126b6c059bc9e9]
   - conda-forge::pip=20.1[md5=db77ee5f3abc11201e877b7477e81d74]
   - conda-forge::poetry=1.0.5[md5=171d7400c2aae11e3a3a30055de3eaa7]

diff --git a/poetry.lock b/poetry.lock
diff --git a/pyproject.toml b/pyproject.toml
@@ -10,7 +10,7 @@ cartopy = "^0.18.0"
 cython = "^0.29.18"
 datashader = "^0.10.0"
 distributed = "^2.16.0"
-geoviews = "^1.7.0"
+geoviews = "^1.8.1"
 h5netcdf = "^0.8.0"
 intake = {extras = ["dataframe", "server"], version = "^0.5.5"}
 intake-xarray = { git = "https://github.com/intake/intake-xarray.git", rev = "bf98a3c69eea81be716b310e33aeefbf1a89b1d0" }