#235 progress #286 cleanup wip

vscentrum · Feb 22, 2024 · 9d88053 · 9d88053
1 parent 87fcd39
commit 9d88053
Show file tree

Hide file tree

Showing 3 changed files with 4 additions and 1,412 deletions.
diff --git a/235_singleM/ExpressBetaDiversity-1.0.10-GCC-12.3.0.eb b/235_singleM/ExpressBetaDiversity-1.0.10-GCC-12.3.0.eb
@@ -18,7 +18,10 @@ dependencies = [
 ]
 
 prebuildopts = "cd source && "
-prebuildopts += "sed -i 's|#!/usr/bin/python|#!/usr/bin/env python|g' dep.py && "
+# fix wrong regex pattern which makes: FutureWarning: split() requires a non-empty pattern match.
+prebuildopts += "sed -i '36 s/*/+/' dep.py && "
+# force use python from dependencies not the one on a node
+buildopts = "DEP='python dep.py'"
 
 files_to_copy = [
     'bin',
@@ -39,6 +42,4 @@ sanity_check_commands = [
     'cd bin && ExpressBetaDiversity -u',
 ]
 
-# fix_python_shebang_for = ['source/dep.py', 'scripts/*']
-
 moduleclass = 'bio'