#235 #271 #71 progress

vscentrum · Feb 6, 2024 · 1cef9f7 · 1cef9f7
1 parent 1a77a62
commit 1cef9f7
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Showing 5 changed files with 10 additions and 10 deletions.
diff --git a/235_singleM/SRA-Toolkit-3.0.10-gompi-2023a.eb b/235_singleM/SRA-Toolkit-3.0.10-gompi-2023a.eb
@@ -43,7 +43,8 @@ configopts = '-DVDB_INCDIR="$EBROOTNCBIMINVDB/include" -DVDB_LIBDIR="$EBROOTNCBI
 configopts += '-DBUILD_TOOLS_LOADERS=ON -DBUILD_TOOLS_INTERNAL=ON'
 
 
-buildopts = ' && cd ngs && make'
+# buildopts = ' && cd ngs && make'
+prebuildopts = 'cd ngs && make && cd - && '
 
 _sra_bin = [
     'abi-dump', 'abi-load', 'align-info', 'bam-load', 'cache-mgr', 'cg-load', 'copycat', 'fasterq-dump', 'fastq-dump',

diff --git a/235_singleM/mfqe-0.5.0-GCCcore-12.3.0.eb → 235_singleM/mfqe-0.5.0-GCC-12.3.0.eb b/235_singleM/mfqe-0.5.0-GCCcore-12.3.0.eb → 235_singleM/mfqe-0.5.0-GCC-12.3.0.eb
@@ -6,7 +6,7 @@ version = '0.5.0'
 homepage = 'https://github.com/wwood/mfqe'
 description = 'extract one or more sets of reads from a FASTQ (or FASTA) file by specifying their read names.'
 
-toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+toolchain = {'name': 'GCC', 'version': '12.3.0'}
 
 source_urls = ['https://github.com/wwood/mfqe/archive/']
 sources = ['v%(version)s.tar.gz']

diff --git a/271_phyluce/btllib-1.7.0-GCC-12.3.0.eb b/271_phyluce/btllib-1.7.0-GCC-12.3.0.eb
@@ -19,7 +19,7 @@ sources = [{
         'keep_git_dir': True,
     }
 }]
-checksums = ['62936bf7b136c1628736d5b69ba9b7f738417fa19802e4e5e36c2bf35e7aa9fa']
+checksums = [None]
 
 dependencies = [
     ('Python', '3.11.3'),

diff --git a/71_GRASP_suite/GRASPsuite-other-jar.eb → ...ASP_suite/GRASPsuite-2023.05.09-system.eb b/71_GRASP_suite/GRASPsuite-other-jar.eb → ...ASP_suite/GRASPsuite-2023.05.09-system.eb
@@ -1,8 +1,8 @@
 easyblock = 'JAR'
 
 name = 'GRASP-suite'
-version = '2022-10-14'
-local_commit = '04744b0'
+version = '2023-05-09'
+local_commit = '97cceec'
 versionsuffix = '-Java-%(javaver)s'
 
 homepage = 'https://github.com/bodenlab/GRASP-suite/'
@@ -11,15 +11,14 @@ description = """GRASP-suite is a collection of tools and tutorials to perform a
 analyse ancestral sequence reconstruction."""
 
 toolchain = SYSTEM
-# https://github.com/bodenlab/GRASP/blob/04744b0ea3d802645b73ab7e799145d306ee437c/src/main/resources/grasp-repo/com/asr/bnkit/1.0/bnkit-1.0.jar
-source_urls = ['https://github.com/bodenlab/GRASP/blob/%s/src/main/resources/grasp-repo/com/asr/bnkit/1.0/' % local_commit]
+
+source_urls = ['https://github.com/bodenlab/GRASP-suite/blob/%s/content/project/graspcmd/archive/' % local_commit]
 sources = [{
-    "download_filename": "bnkit-1.0.jar",
+    "download_filename": "bnkit.jar",
     "filename": "%(name)s-%(version)s.jar",
 }]
-checksums = ['3f6009d23c28c5ebfddbc4de5deac8afab42acb512676ae821e57f97850db243']
+checksums = ['abb38d9dc799d9ee7342eaf829a1b68a02ca18896378eae81faa6a75f4b1fb24']
 
-# source_urls = ['https://github.com/bodenlab/GRASP/raw/%s/src/main/resources/lib/' % local_commit]
 dependencies = [('Java', '17')]
 
 postinstallcmds = [

diff --git a/71_GRASP_suite/GRASPsuite-2022.7.4-system.eb → 71_GRASP_suite/GRASPsuite2.eb b/71_GRASP_suite/GRASPsuite-2022.7.4-system.eb → 71_GRASP_suite/GRASPsuite2.eb