v0.2.7

Added:

• Utility functions fastodf(), fasdirdf(), and list_files().

v0.2.6

Added:

• cdsearchr() provides an R-based interface for NCBI's CD-SEARCH and facilitates easy annotation of protein sequence sets.

v0.2.5

Modified:

• pdomvisr() can now accept user-supplied input from tsvtogginp_multi(). Refer to the Note section under ?pdomvisr() for details.

v0.2.4

Modified:

• pdomvisr() now indicates sequence positions starting from 1 instead of 0.

v0.2.3

Breaking changes to pdomvisr():
Added:

• Ability to handle overlapping annotations.
• Ability to draw features with completely user-defined heights and colors.
• Arguments to let user control legend and axis titles + Y-axis visibility.

Modified:

• input format now needs feature draw height and feature color information as columns (these must be supplied by the user).
• Default base and offset colors + fills have been changed from black to gray.
• label_size = "repel" now has arrowheads at the end.

Removed:

• Options cbfcols, featcols, hfeat are now gone, as these are fully user-supplied values here on forth.

v0.2.2

• Fixed issue in tsvtogginp() (called by pdomvisr()) that caused sequence names that are factors to be (incorrectly) displayed as integers because of a forced as.character() conversion.

v0.2.1

• Minor but important fix: tsvtogginp had edge case issue where domains would get assigned to portions of the sequence they didn't belong to (in addition to those they did belong to) due to two as.numeric()s that had been missing.

v0.2.0

• Major: added pdomvisr() for visualization of protein domain structures.

• Minor: updated documentation (added vignettes), minor fixes to msavisr().