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Minor bug fixes and improvements#552

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VChristiaens merged 52 commits intovortex-exoplanet:mastervortex-exoplanet/VIP:masterfrom VChristiaens:itpca_dvptVChristiaens/VIP:itpca_dvptCopy head branch name to clipboardAug 5, 2022

+93-42

Commits

Commits on Nov 10, 2021

• Addition of itpca subpackage and routines

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  610d258

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• added theta_init argument in pca_annular_it for feves

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Commits on Nov 15, 2021

• Added option to run optimal it PCA with results from a fiducial run

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• fixed bug related to fiducial results slicing

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• fixed bug related to non integer slice index

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• merged both theta_init and rot_options additions

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Commits on Nov 16, 2021

• Merge remote-tracking branch 'origin/master' into itpca_dvpt

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• Better multiprocessing for opt_feves

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• added compatibility with nproc=None input

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Commits on Nov 23, 2021

• Bug fix in optimized iterative PCA for 'fiducial' figure of merit - check whether a file exists before opening

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Commits on Dec 1, 2021

• fixed bug for optimal feves with fiducial input - nfrac was not optimized

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Commits on Dec 2, 2021

• Merge remote-tracking branch 'upstream/master' into itpca_dvpt

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Commits on Jan 7, 2022

• Applied derotation options to sig_cube

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• Fixed tutorial link showing up in README

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• Fixed minus angle issue in mp derotation

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• Fixed frame shifting of odd-size frames with FFT-based method affecting injection of zero-padded PSF injections

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Commits on Jan 8, 2022

• modified VIP structure: andromeda --> invprob

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Commits on May 27, 2022

• Unified non-automatic merge issues

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Commits on May 28, 2022

• Added 'greedy' module

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• Renamed itpca into greedy

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• Updated init file to include fmmf and paco

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• adapted import to stim_map and inverse_stim_map

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• Tests: Updated arguments of frame_center_radon according to recent update of the function

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Commits on May 29, 2022

• Tests: Updated Radon test to take mean of spectral channels before applying Radon

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• Tests: pre-centering with Radon before testing a random shift

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Commits on May 30, 2022

• Tests: pre-centering with Radon before testing a random shift

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Commits on May 31, 2022

• Improved docs for pca_annulus

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• Debugged Radon-transform based centering: added high-pass filtering option

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• Test: solved poor-performance Radon-transform based centering by subtracting biasing BKG star and high-pass filtering input image

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Commits on Jun 1, 2022

• Merge branch 'master' into itpca_dvpt

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• tests: changed npc for NEGFC-MCMC test to a more optimal value

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Commits on Jun 3, 2022

• Updated ref in optimal iterative PCA algo description

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Commits on Jun 14, 2022

• Merged master with improved docs

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• Merged master with improved docs

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Commits on Jun 15, 2022

• Made residual speckle noise uncertainty compatible with a 4D input cube

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Commits on Jun 17, 2022

• Merge branch 'master' into itpca_dvpt

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Commits on Jun 21, 2022

• Minor bug fix in PCA patch function

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Commits on Jul 12, 2022

• sphinx-rtd-theme added among developer requirements

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• Minor bug fix in non frame-by-frame mode for cube bad pixel correction

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• Typo fix in fmmf description

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• further automation of FEVES (automated fractionation based on convergence and other criteria)

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• Updated open_fits behaviour for headers in multiple HDUs

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Commits on Jul 19, 2022

• Clearer description and comment in FFT-based rotation code

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• Merge branch 'master' into itpca_dvpt

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Commits on Jul 26, 2022

• Minor bug fix in residual speckle noise estimation function in 4D case

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• Typo fix in description

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Commits on Jul 27, 2022

• Adapted residual speckle noise estimation function for compatibility with the case of forced r and PA

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Commits on Aug 2, 2022

• negfc residual speckle noise estimation algorithm made compatible with forced position + 4D mSDI+ADI input cube

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• NEGFC figure of merit can now be computed within an area corresponding to the intersection between circle (centered on planet position) and annulus (instead of just the circle)

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Commits on Aug 5, 2022

• Added the possibility of providing custom center coordinates for mask_circle

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• improved description of approx_stellar_position

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• Contrast curve: improved efficiency for algorithms that do not involve pre-scaling (single instead of double estimation of radial noise profile)

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