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Version 1.0#639

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NickleDave merged 64 commits intomainvocalpy/vak:mainfrom version-1.0vocalpy/vak:version-1.0Copy head branch name to clipboardMar 6, 2023

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Commits on Mar 3, 2023

• DEV: Add lightning as dependency in pyproject.toml

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• Add TweetyNet as a LightningModule subclass

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• Remove engine sub-package

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• Add TweetyNet as vak.models entry point

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• Rewrite TeenyTweetyNet as LightningModule also

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• Add labelmap parameter to models.from_config_model_map function

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• Remove tweetynet from test dependencies in pyproject.toml

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• Fix how vak/config/models loads model config sections

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• Add src/vak/trainer.py with get_trainer function

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• Rewrite core/train to use vak.trainer.get_trainer

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• Import net and model classes in vak/models/__init__.py

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• Rewrite core/eval.py to use lightning trainer

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• Rewrite core/predict.py to use lightning

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• TST: Fix test asserts that check for log files

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• DEV: Fix session in noxfile.py: test_data_download_generated_all

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• Fix tests/scripts/fix_prep_csv_paths.py

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• DEV: Update generated test data URLs in noxfile.py

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• DOC: Update CHANGELOG after merging #598 [skip ci]

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• Remove forward method from TweetyNet LightningModule

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• Add vak/nets/

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• Add src/vak/models/base.py

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• Add src/vak/models/definition.py

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• Add src/vak/models/decorator.py

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• Add vak/models/windowed_frame_classification_model.py

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• Rewrite models using model decorator

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• Fix entry points in pyproject.toml

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• Add/fix/remove imports in models/__init__.py

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• Depend on pytorch_lightning, not lightning

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• Use model from model_config_map in core/eval.py

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• Use model from models_map in core/predict.py

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• Use model.load_state_dict_from_path in core/train

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• Add tests/test_nets/

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• Add tests/test_models/test_teenytweetynet + test_tweetynet

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• Add tests/test_models/conftest.py

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• Add tests/test_models/test_base.py

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• Add tests/test_models/test_decorator.py

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• Add tests/test_models/test_definition.py

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• WIP: Add doc/reference/models.md

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• Add tests/test_models/test_windowed_frame_classification_model.py

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• CI: Test if using 'ubuntu-20.04' fixes inscrutable errors

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• Update CHANGELOG after merging #605 [skip ci]

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• BUG: Fix WindowedFrameClassificationModel attribute

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• CLN: Remove unused import from src/vak/models/teenytweetynet.py

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• CLN: Remove entry points for models, metrics. Fixes #601

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• CI: Run nox session as verbose in ci-linux.yml

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• TST: Fix test failures in tests/test_models for CI

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• DOC: Update CHANGELOG after merging #621 [skip ci]

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• CLN: Remove unused multiple model functionality, fix #538

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• DEV: Fix filenames of generated test data tars to be '1.x'

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• DEV/CI: Update GENERATED_TEST_DATA_CI_URL in noxfile.py

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• TST: Fix script tests/scripts/fix_prep_csv_paths.py

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• DOC: Update CHANGELOG after merging #625 [skip ci]

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• BUG: Fix post_tfm in version 1.0

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• DOC: Update CHANGELOG after merging #626 [skip ci]

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• BUG: Fix how model decorator sets subclass' module

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• DEV: Specify python=3.10 in two sessions in noxfile.py

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• CLN: Remove unused import from models/decorator.py [skip ci]

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• CLN: Remove vak/engine/model.py, no longer used

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• DOC: Update CHANGELOG after merging #627 [skip ci]

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• BUG: Fix default for post_tfm_kwargs in config classes

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• ENH: Log training time in core.train, fix #2

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• DOC: Update CHANGELOG after merging #628 [skip ci]

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• ENH: Rename config option csv_path -> dataset_path, fix #549

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• DOC: Update CHANGELOG after merging #632 [skip ci]

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