issue #409 replace NaN

R/format_tt.R

@@ -18,9 +18,9 @@
 #' @param math Logical. If TRUE, wrap cell values in math mode `$..$`. This is useful for LaTeX output or with HTML MathJax `options(tinytable_html_mathjax=TRUE)`.
 #' @param other A function to format columns of other types. Defaults to `as.character()`.
 #' @param replace Logical, String or Named list of vectors
-#' - TRUE: Replace `NA` by an empty string.
-#' - FALSE: Print `NA` as the string "NA".
-#' - String: Replace `NA` entries by the user-supplied string.
+#' - TRUE: Replace `NA` and `NaN` by an empty string.
+#' - FALSE: Print `NA` and `NaN` as strings.
+#' - String: Replace `NA` and `NaN` entries by the user-supplied string.
 #' - Named list: Replace matching elements of the vectors in the list by theirs names. Example:
 #'      - `list("-" = c(NA, NaN), "Tiny" = -Inf, "Massive" = Inf)`
 #' @param escape Logical or "latex" or "html". If TRUE, escape special characters to display them as text in the format of the output of a `tt()` table.
@@ -94,7 +94,6 @@ format_tt <- function(x,
                       quarto = get_option("tinytable_format_quarto", default = FALSE),
                       fn = get_option("tinytable_format_fn", default = NULL),
                       sprintf = get_option("tinytable_format_sprintf", default = NULL)) {
-
   assert_integerish(digits, len = 1, null.ok = TRUE)
   assert_choice(num_fmt, c("significant", "significant_cell", "decimal", "scientific"))
   assert_flag(num_zero)
@@ -227,11 +226,11 @@ format_tt_lazy <- function(x,
       if (!is.null(bool) && is.logical(ori[i, col])) {
         out[i, col] <- bool(ori[i, col, drop = TRUE])
 
-      # date
+        # date
       } else if (!is.null(date) && inherits(ori[i, col], "Date")) {
         out[i, col] <- format(ori[i, col, drop = TRUE], date)
 
-      # numeric
+        # numeric
       } else if (!is.null(digits) && is.numeric(ori[i, col, drop = TRUE])) {
         tmp <- format_numeric(ori[i, col],
           num_suffix = num_suffix,
@@ -243,15 +242,19 @@ format_tt_lazy <- function(x,
         )
         if (!is.null(tmp)) out[i, col] <- tmp
 
-      # other
+        # other
       } else if (is.function(other)) {
         out[i, col] <- other(ori[i, col, drop = TRUE])
       }
     }
 
     for (k in seq_along(replace)) {
       idx <- ori[i, col, drop = TRUE] %in% replace[[k]]
-      out[i, col][idx] <- names(replace)[[k]]
+      if (identical(names(replace)[[k]], " ")) {
+        out[i, col][idx] <- ""
+      } else {
+        out[i, col][idx] <- names(replace)[[k]]
+      }
     }
   } # loop over columns
 

R/sanity.R

@@ -13,23 +13,23 @@ sanity_align <- function(align, i) {
 
 
 sanitize_i <- function(i, x, pre_group_i = FALSE, lazy = TRUE) {
-    out <- seq_len(nrow(x))
-    if (is.null(i) && isTRUE(lazy)) {
-        out <- NA
-        attr(out, "null") <- TRUE
-        attr(out, "body") <- seq_len(nrow(x))
-        attr(out, "head") <- integer()
-    } else {
-        if (!is.null(i)) {
-            out <- i
-        } else if (inherits(x, "tinytable")) {
-            out <- seq_len(nrow(x@table_dataframe))
-        }
-        attr(out, "null") <- FALSE
-        attr(out, "body") <- out[out > 0]
-        attr(out, "head") <- out[out < 1]
+  out <- seq_len(nrow(x))
+  if (is.null(i) && isTRUE(lazy)) {
+    out <- NA
+    attr(out, "null") <- TRUE
+    attr(out, "body") <- seq_len(nrow(x))
+    attr(out, "head") <- integer()
+  } else {
+    if (!is.null(i)) {
+      out <- i
+    } else if (inherits(x, "tinytable")) {
+      out <- seq_len(nrow(x@table_dataframe))
     }
-    return(out)
+    attr(out, "null") <- FALSE
+    attr(out, "body") <- out[out > 0]
+    attr(out, "head") <- out[out < 1]
+  }
+  return(out)
 }
 sanitize_i <- function(i, x, pre_group_i = FALSE, lazy = TRUE) {
   if (is.character(i)) {
@@ -430,11 +430,12 @@ sanitize_notes <- function(notes) {
 
 sanitize_replace <- function(replace) {
   if (isTRUE(replace)) {
-    replace <- stats::setNames(list(NA), "")
+    replace <- stats::setNames(list(NA, NaN), c(" ", " "))
   } else if (isFALSE(replace)) {
-    replace <- stats::setNames(list(NULL), "")
+    replace <- list(NULL)
   } else if (isTRUE(check_string(replace))) {
-    replace <- stats::setNames(list(NA), replace)
+    if (identical(replace, "")) replace <- " "
+    replace <- stats::setNames(list(NA, NaN), c(replace, replace))
   } else if (!is.list(replace) || is.null(names(replace))) {
     stop("`replace` should be TRUE/FALSE, a single string, or a named list.", call. = FALSE)
   }

inst/tinytest/test-format_tt.R

@@ -216,3 +216,17 @@ expect_true("16 GB" %in% tab$memory)
 expect_true("99%" %in% tab$speed_benchmark)
 expect_false("2024-01-15" %in% tab$date_lookup)
 
+
+# Issue #409: both NA and NaN should be replaced
+options(tinytable_format_replace = NULL)
+tab <- data.frame(x = c(1, NA, NaN, Inf))
+tab0 <- tt(tab) |> print("dataframe")
+tab1 <- tt(tab) |>
+  format_tt() |>
+  print("dataframe")
+tab2 <- tt(tab) |>
+  format_tt(replace = TRUE) |>
+  print("dataframe")
+expect_equivalent(tab0$x, c("1", "NA", "NaN", "Inf"))
+expect_equivalent(tab1$x, c("1", "NA", "NaN", "Inf"))
+expect_equivalent(tab2$x, c("1", "", "", "Inf"))