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cookiecutter-snakemake-workflow

Cookiecutter template for snakemake workflows.

Usage

Install cookiecutter

conda install -c conda-forge cookiecutter

Create new Snakemake Workflow

cookiecutter https://gitlab.com/functional-genomics/cookiecutter-snakemake-workflow
# or
cookiecutter gl:functional-genomics/cookiecutter-snakemake-workflow

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  • Python 60.6%
  • Makefile 39.4%