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vg 1.53.0 - Valmontone
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@adamnovak adamnovak released this 04 Dec 21:27
· 336 commits to master since this release
v1.53.0
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Download for Linux

Don't forget to mark the static binary executable:

chmod +x vg

Docker Image: quay.io/vgteam/vg:v1.53.0

Buildable Source Tarball: vg-v1.53.0.tar.gz

Includes source for vg and all submodules. Use this instead of Github's "Source Code" downloads; those will not build as they do not include code for bundled dependencies that the vg build process needs.

This release includes:

  • vg sim no longer crashes on graphs with 1-node cycles
  • vg autoindex can identify haplotypes specified as P-lines in a GFA
  • Set reference samples in GBWT or GBZ with vg gbwt option --set-reference.
  • vg rna no longer projects transcripts twice onto a reference given by RS tag in a GFA
  • vg rna assigns unique names to twice-projected transcripts on cyclic haplotypes
  • GBWT construction automatically increases buffer size if the paths are too long.
  • In vg haplotypes, the default number of candidates for diploid sampling is now 32.
  • vg giraffe now explains that --named-coordinates works for GAF output
  • libvgio now uses quoted includes internally
  • vg's README now prominently lists some recommended papers to cite when using parts of vg in your work
  • Updated dozeu submodule should no longer crash vg giraffe and vg surject.

Updated Submodules

  • dozeu
  • gbwt
  • libhandlegraph
  • libvgio
Assets 5
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