Changelog

0.1.0 (2024-02-29)

Documentation

adding datasource list (#6) (cae4a75)
adding future plans (#4) (171efc2)
adding repository overview section (#5) (316b2e8)
initial dataflow description (#3) (16f5522)
start out with architecture documentation (#1) (e22afc7)

0.6.3 (2024-01-24)

Bug Fixes

write out .sample_data in dragen-to-bam-qc (#101) (#102) (638c294)

Documentation

fix link to pypi in README (#97) (8f25193)

0.6.2 (2024-01-23)

Bug Fixes

properly assign version in release-please (#91) (3037f7a)
version for release-please in CI (#89) (2aedb64)

Documentation

add pypi and bioconda badges (#96) (88c7f79)

0.6.1 (2024-01-23)

Continuous Integration

install setuptools to fix "python sdist" in release-please (#87) (9b03c68)

0.6.0 (2024-01-23)

Features

add "projects project-list" command (#50) (057abd5)
conversion from DRAGEN QC to legacy varfish format (#85) (#86) (043dbc3)
migrate argparse code to typer (#48) (#61) (d1c86d4)
migration from attrs to pydantic (#49) (#65) (2c9e402)

Documentation

installation instructions in manual (#69) (0afb87c)
updating README, adding terraform docs (#68) (f6dd1bf)

0.5.3 (2023-07-17)

Features

force release of 0.6 (#46) (f003be8)

Bug Fixes

allow varfish upload without SV effects (#43) (4aead65)
fixing issue with logging (ab62f24)

0.5.2 (2023-07-17)

Bug Fixes

allow varfish upload without SV effects (#43) (4aead65)
Fixing case list API (#37) (ccaccfc)

0.5.2 (2023-06-12)

Bug Fixes

Fixing case list API (#37) (ccaccfc)

0.5.1 (2023-02-09)

Bug Fixes

manifest for readme and changelog (#35) (f14d647)

0.5.0 (2023-02-09)

Features

replace python-Levenshtein with polyleven (#26) (#32) (73703bd)

Documentation

fixing CI status badge (#34) (9967bbd)

0.4.0

Adding support for varannos REST API (#24).

0.3.5

Allowing to upload per-case gene annotation file (#20).
Adding client endpoint for retrieving case from API (#18).

0.3.4

Adding support for latest varfish-annotator output for svs (#16).

0.3.3

Case importer distinguished smallvar and SV DB info files (#13).

0.3.2

Fixing structuring/unstructuring of genomic region

0.3.1

Allow disabling of verify_ssl in CLI

0.3.0

Adding implementation of REST API (#7).

0.2.8

Adding support to specify genome build on import (defaulting to GRCh37).

0.2.7

Fix reading of non-compressed genotypes TSV file.

0.2.6

Fixes to linting.

0.2.5

Switching build system to Github Actions
Adding many tests
Fixing verify_ssl for case list.

0.2.4

Added --no-verify-ssl.

0.2.3

Added state field to VariantSetImportInfo class.
Added endpoint for updating variant set import info.

0.2.2

More MANIFEST.in fixes.

0.2.1

Fixing package (MANIFEST.in).

0.2.0

Adjusted to upstream REST API changes.
Cases with all files can now be uploaded.

0.1.0

everything is new