Set up Dockerfile for running the R script #59
Workflow file for this run
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: R-CMD-check.yaml | |
| permissions: read-all | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { os: macos-latest, r: "release" } | |
| - { os: windows-latest, r: "release" } | |
| - { os: ubuntu-latest, r: "devel", http-user-agent: "release" } | |
| - { os: ubuntu-latest, r: "release" } | |
| - { os: ubuntu-latest, r: "oldrel-1" } | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - name: Install required R packages | |
| run: | | |
| Rscript -e 'install.packages(c("magrittr", "usethis", "roxygen2"))' | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck,covr,lintr,styler | |
| needs: check | |
| - name: Set up Python for pre-commit | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.x" | |
| - name: Install pre-commit | |
| run: | | |
| pip install pre-commit | |
| pre-commit install | |
| - name: Run pre-commit hooks | |
| run: pre-commit run --all-files | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| upload-snapshots: true | |
| build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")' | |
| - name: Run test coverage | |
| run: Rscript -e 'covr::codecov()' | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Run linting | |
| run: Rscript -e 'lintr::lint_package()' | |
| - name: Check code formatting with styler | |
| run: | | |
| echo "styler::style_pkg(strict = TRUE, scope = 'file', transformers = styler::tidyverse_style(), reindention = FALSE, check_only = TRUE)" | Rscript - |